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Pakket: python3-cyvcf2 (0.30.14-1build1)

Verwijzigingen voor python3-cyvcf2

python3-cyvcf2

Trisquel bronnen:

Het bronpakket cyvcf2 downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Steffen Moeller
  • Liubov Chuprikova
  • Nilesh Patra

Externe bronnen:

Vergelijkbare pakketten:

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Andere aan python3-cyvcf2 gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.17)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-coloredlogs
    colored terminal output for Python 3's logging module
  • dep: python3-numpy (>= 1:1.20.0)
    Fast array facility to the Python 3 language
  • dep: python3-numpy-abi9
    virtueel pakket geboden door python3-numpy

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