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Pakket: python3-cyvcf2 (0.30.14-1build1)

Verwijzigingen voor python3-cyvcf2

python3-cyvcf2

Trisquel bronnen:

Het bronpakket cyvcf2 downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Steffen Moeller
  • Liubov Chuprikova
  • Nilesh Patra

Externe bronnen:

Vergelijkbare pakketten:

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Andere aan python3-cyvcf2 gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
    dep: libc6 (>= 2.7) [armhf]
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-coloredlogs
    colored terminal output for Python 3's logging module
  • dep: python3-numpy (>= 1:1.20.0)
    Fast array facility to the Python 3 language
  • dep: python3-numpy-abi9
    virtueel pakket geboden door python3-numpy

python3-cyvcf2 downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 817,0 kB4733 kB [overzicht]
arm64 806,8 kB4671 kB [overzicht]
armhf 794,9 kB4455 kB [overzicht]
ppc64el 874,8 kB5036 kB [overzicht]