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Pakket: python3-pairtools (1.0.3-1build1)

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations: 

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Andere aan python3-pairtools gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
    dep: libc6 (>= 2.27) [riscv64]
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [riscv64]
    GCC support library
    dep: libgcc-s1 (>= 3.3.1) [niet armhf, riscv64]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.13)
    dep: python3 (>= 3.12~)
  • dep: python3-bioframe
    library to enable flexible, scalable operations on genomic interval dataframes
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-numpy (>= 1:1.25.0)
    Fast array facility to the Python language (Python 3)
  • dep: python3-numpy-abi9
    virtueel pakket geboden door python3-numpy
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-pysam (>= 0.20.0+ds-3~)
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: python3-yaml
    YAML parser and emitter for Python3

python3-pairtools downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 196,0 kB775 kB [overzicht]
arm64 188,0 kB889 kB [overzicht]
armhf 181,4 kB613 kB [overzicht]
ppc64el 220,8 kB953 kB [overzicht]
riscv64 195,3 kB693 kB [overzicht]