Pakket: rna-star (2.7.3a+dfsg-1build2)
Verwijzigingen voor rna-star
Trisquel bronnen:
Het bronpakket rna-star downloaden:
- [rna-star_2.7.3a+dfsg-1build2.dsc]
- [rna-star_2.7.3a+dfsg.orig.tar.xz]
- [rna-star_2.7.3a+dfsg-1build2.debian.tar.xz]
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Steffen Moeller
- Andreas Tille
- Sascha Steinbiss
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
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