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[ Bron: libbio-db-gff-perl ]
Pakket: libbio-db-gff-perl (1.7.4-1)
Verwijzigingen voor libbio-db-gff-perl
Trisquel bronnen:
Het bronpakket libbio-db-gff-perl downloaden:
- [libbio-db-gff-perl_1.7.4-1.dsc]
- [libbio-db-gff-perl_1.7.4.orig.tar.gz]
- [libbio-db-gff-perl_1.7.4-1.debian.tar.xz]
Beheerder:
Original Maintainer:
- Michael R. Crusoe
Externe bronnen:
- Homepage [metacpan.org]
Vergelijkbare pakketten:
Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators.
The following operations are supported by this module:
- retrieving a segment of sequence based on the ID of a landmark
- retrieving the DNA from that segment
- finding all annotations that overlap with the segment
- finding all annotations that are completely contained within thesegment
- retrieving all annotations of a particular type, either within asegment, or globally
- conversion from absolute to relative coordinates and back again,using any arbitrary landmark for the relative coordinates
- using a sequence segment to create new segments based on relativeoffsets
Andere aan libbio-db-gff-perl gerelateerde pakketten
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-
- dep: libapache-dbi-perl
- interface connecting Apache server to database via perl's DBI
-
- dep: libbio-db-biofetch-perl
- Database object interface to BioFetch retrieval
-
- dep: libbio-perl-perl
- BioPerl core perl modules
-
- dep: libcgi-pm-perl
- module for Common Gateway Interface applications
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language