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[ Bron: libbio-samtools-perl  ]

Pakket: libbio-samtools-perl (1.43-2build1)

Perl interface to SamTools library for DNA sequencing

Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.

Andere aan libbio-samtools-perl gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: perl (>= 5.30.0-7)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.30.0
    virtueel pakket geboden door perl-base
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • enh: gbrowse
    GMOD Generic Genome Browser
  • enh: samtools
    processing sequence alignments in SAM, BAM and CRAM formats

libbio-samtools-perl downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 187,9 kB618 kB [overzicht]
armhf 171,7 kB484 kB [overzicht]