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Pakket: mafft (7.453-1)

Verwijzigingen voor mafft

mafft

Trisquel bronnen:

Het bronpakket mafft downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Charles Plessy
  • Andreas Tille

Externe bronnen:

Vergelijkbare pakketten:

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: 

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods: 
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Andere aan mafft gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • rec: blast2
    transitional dummy package to ncbi-blast+-legacy
  • rec: libwww-perl
    simple and consistent interface to the world-wide web
  • rec: lynx
    classic non-graphical (text-mode) web browser
  • rec: ruby
    Interpreter of object-oriented scripting language Ruby (default version)
  • enh: t-coffee
    Multiple Sequence Alignment

mafft downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 1.005,3 kB11304 kB [overzicht]
armhf 743,9 kB7537 kB [overzicht]