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Pakiet: python3-unifrac (0.10.0-3build1)

high-performance phylogenetic diversity calculations

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains the Python3 module.

Inne pakiety związane z python3-unifrac

  • wymaga
  • poleca
  • sugeruje
  • dep: cython3
    C-Extensions for Python 3
  • dep: libc6 (>= 2.17)
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libssu0 (>= 0.10.0)
    high-performance phylogenetic diversity calculations (lib)
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-biom-format
    Biological Observation Matrix (BIOM) format (Python 3)
  • dep: python3-h5py-serial
    general-purpose Python interface to hdf5 (Python 3 serial)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-skbio
    Python3 data structures, algorithms, educational resources for bioinformatic

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