Pakiet: pirs (2.0.2+dfsg-10)
Odnośniki dla pirs
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego pirs:
Opiekun:
Original Maintainers:
- Debian Med Packaging Team (Archiwum e-mail)
- Andreas Tille
Zasoby zewnętrzne:
- Strona internetowa [github.com]
Podobne pakiety:
Profile based Illumina pair-end Reads Simulator
The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.
The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.
The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.
To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.
Inne pakiety związane z pirs
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- dep: fonts-liberation
- Fonts with the same metrics as Times, Arial and Courier
-
- dep: gnuplot
- Command-line driven interactive plotting program.
również pakiet wirtualny udostępniany przez gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: pirs-profiles
- profile basd Illumina pair-end Reads Simulator (profile data)
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- dep: zlib1g (>= 1:1.2.0.2)
- compression library - runtime
Pobieranie pirs
Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
---|---|---|---|
ppc64el | 119,9 KiB | 423 KiB | [lista plików] |