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[ Pakiet źródłowy: r-bioc-grohmm ]
Pakiet: r-bioc-grohmm (1.28.0-1)
Odnośniki dla r-bioc-grohmm
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego r-bioc-grohmm:
- [r-bioc-grohmm_1.28.0-1.dsc]
- [r-bioc-grohmm_1.28.0.orig.tar.gz]
- [r-bioc-grohmm_1.28.0-1.debian.tar.xz]
Opiekun:
Original Maintainers:
- Debian R Packages Maintainers
- Steffen Moeller
Zasoby zewnętrzne:
- Strona internetowa [bioconductor.org]
Podobne pakiety:
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
Inne pakiety związane z r-bioc-grohmm
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [armhf]
-
- dep: r-api-4.0
- pakiet wirtualny udostępniany przez r-base-core
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- dep: r-api-bioc-3.14
- pakiet wirtualny udostępniany przez r-bioc-biocgenerics
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- dep: r-base-core (>= 4.1.2-1ubuntu1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicalignments (>= 1.15.6)
- BioConductor representation and manipulation of short genomic alignments
-
- dep: r-bioc-genomicranges (>= 1.31.8)
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges (>= 2.13.12)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rtracklayer (>= 1.39.7)
- GNU R interface to genome browsers and their annotation tracks
-
- dep: r-bioc-s4vectors (>= 0.17.25)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
Pobieranie r-bioc-grohmm
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 4 333,5 KiB | 4500 KiB | [lista plików] |
| arm64 | 4 331,9 KiB | 4492 KiB | [lista plików] |
| armhf | 4 329,3 KiB | 4479 KiB | [lista plików] |
| ppc64el | 4 340,0 KiB | 4576 KiB | [lista plików] |