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Pakiet: biobambam2 (2.0.183+ds-1)

tools for early stage alignment file processing

This package contains some tools for processing BAM files, including 

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Inne pakiety związane z biobambam2

  • wymaga
  • poleca
  • sugeruje
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [nie amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.4) [amd64]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libmaus2-2 (>= 2.0.806+ds)
    collection of data structures and algorithms for biobambam
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Pobieranie biobambam2

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
amd64 9 479,0 KiB55146 KiB [lista plików]
arm64 8 585,2 KiB48926 KiB [lista plików]
ppc64el 9 053,3 KiB64666 KiB [lista plików]