Skip to content
Sections
>> Trisquel >> Pakiety >> aramo >> science >> kissplice
etiona  ] [  nabia  ] [  aramo  ]
[ Pakiet źródłowy: kissplice  ]

Pakiet: kissplice (2.5.5+dfsg-1)

Detection of various kinds of polymorphisms in RNA-seq data

KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.

Inne pakiety związane z kissplice

  • wymaga
  • poleca
  • sugeruje
  • dep: bcalm
    de Bruijn compaction in low memory
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Pobieranie kissplice

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
amd64 610,5 KiB2087 KiB [lista plików]
arm64 607,6 KiB2065 KiB [lista plików]
ppc64el 624,9 KiB2619 KiB [lista plików]