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[ Pakiet źródłowy: svim  ]

Pakiet: svim (2.0.0-2)

Structural variant caller for long sequencing reads

SVIM is a structural variant caller for long sequencing reads. It is able to detect, classify and genotype five different classes of structural variants. Unlike existing methods, SVIM integrates information from across the genome to precisely distinguish similar events, such as tandem and interspersed duplications and simple insertions.

Inne pakiety związane z svim

  • wymaga
  • poleca
  • sugeruje
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-cpuinfo
    Python module for getting CPU info (Python 3)
  • dep: python3-edlib
    library for sequence alignment using edit distance (Python3 module)
  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-pyspoa
    Python bindings to spoa
  • dep: python3-scipy
    scientific tools for Python 3

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