Skip to content
Sections
>> Trisquel >> Pakiety >> ecne (12.0LTS) >> python >> python3-unifrac
[  aramo  ] [  ecne  ] [  xolotl  ]
[ Pakiet źródłowy: unifrac  ]

Pakiet: python3-unifrac (1.3-2build1)

high-performance phylogenetic diversity calculations

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains the Python3 module.

Inne pakiety związane z python3-unifrac

  • wymaga
  • poleca
  • sugeruje
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
  • dep: libssu0 (>= 1.4)
    high-performance phylogenetic diversity calculations (lib)
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.13)
    dep: python3 (>= 3.12~)
  • dep: python3-biom-format
    Biological Observation Matrix (BIOM) format (Python 3)
  • dep: python3-h5py (>= 3.3.0)
    general-purpose Python interface to hdf5
  • dep: python3-iow
    balanced parentheses tree structure
  • dep: python3-numpy (>= 1:1.25.0)
    Fast array facility to the Python language (Python 3)
  • dep: python3-numpy-abi9
    pakiet wirtualny udostępniany przez python3-numpy
  • dep: python3-skbio (>= 0.5.8-3~)
    Python3 data structures, algorithms, educational resources for bioinformatic

Pobieranie python3-unifrac

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
amd64 149,3 KiB700 KiB [lista plików]