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Pakiet: python-freecontact (1.1-2build4)

fast protein contact predictor - binding for Python

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Python binding.

Inne pakiety związane z python-freecontact

  • wymaga
  • poleca
  • sugeruje
  • dep: libboost-python1.65.1
    Boost.Python Library
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libfreecontact0v5
    fast protein contact predictor library
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
    dep: python (<< 2.8)
    dep: python (>= 2.7~)

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