Pakiet: last-align (921-1)

Odnośniki dla last-align

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego last-align:

Opiekun:

Debian Med Packaging Team (Archiwum e-mail)

Original Maintainers:

Debian Med Packaging Team (Archiwum e-mail)
Charles Plessy
Andreas Tille

Zasoby zewnętrzne:

Strona internetowa [last.cbrc.jp]

Podobne pakiety:

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Inne pakiety związane z last-align

wymaga

poleca

sugeruje

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb

dep: libc6 (>= 2.4) [i386]
dep: libgcc1 (>= 1:3.0) [amd64]

GCC support library

dep: libgcc1 (>= 1:4.2) [i386]
dep: libstdc++6 (>= 6)

GNU Standard C++ Library v3
dep: parallel

build and execute command lines from standard input in parallel
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: python

interactive high-level object-oriented language (default version)
rec: python-pil

Python Imaging Library (Pillow fork)

Pobieranie last-align

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	712,6 KiB	3279 KiB	[lista plików]
i386	647,3 KiB	3395 KiB	[lista plików]

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