Pakiet: salmon (0.7.2+ds1-3)
Odnośniki dla salmon
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego salmon:
Opiekun:
Original Maintainers:
- Debian Med Packaging Team (Archiwum e-mail)
- Michael R. Crusoe
- Kevin Murray
Zasoby zewnętrzne:
- Strona internetowa [github.com]
Podobne pakiety:
wicked-fast transcript quantification from RNA-seq data
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of the lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.
Inne pakiety związane z salmon
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- dep: libboost-filesystem1.65.1
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.65.1
- Boost.Iostreams Library
-
- dep: libboost-program-options1.65.1
- program options library for C++
-
- dep: libboost-system1.65.1
- Operating system (e.g. diagnostics support) library
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- dep: libc6 (>= 2.22)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
-
- dep: libdivsufsort3 (>= 2.0.1)
- fast suffix array construction
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- dep: libgcc1 (>= 1:4.2)
- GCC support library
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- dep: libjellyfish-2.0-2
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libjemalloc1 (>= 2.1.1)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libjs-sphinxdoc (>= 1.0)
- JavaScript support for Sphinx documentation
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- dep: libstaden-read11
- Staden library for reading and writing DNA sequencing results
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- dep: libtbb2
- parallelism library for C++ - runtime files
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- dep: sphinx-rtd-theme-common
- sphinx theme from readthedocs.org (common files)
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Pobieranie salmon
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 1 470,2 KiB | 5667 KiB | [lista plików] |