Pakiet: seer (1.1.4-2build2)
Odnośniki dla seer
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego seer:
Opiekun:
Original Maintainers:
- Debian Med Packaging Team (Archiwum e-mail)
- Andreas Tille
Zasoby zewnętrzne:
- Strona internetowa [github.com]
Podobne pakiety:
genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.
Inne pakiety związane z seer
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-
- dep: libarmadillo9 (>= 1:9.800.4+dfsg)
- streamlined C++ linear algebra library
-
- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- lub libblas.so.3
- pakiet wirtualny udostępniany przez libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libboost-program-options1.71.0
- program options library for C++
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC support library
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libhdf5-103
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- dep: libtext-csv-perl
- comma-separated values manipulator (using XS or PurePerl)
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- sug: fsm-lite
- frequency-based string mining (lite)
Pobieranie seer
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| armhf | 343,6 KiB | 1134 KiB | [lista plików] |