Pakiet: r-bioc-dada2 (1.14.1+dfsg-1)
Odnośniki dla r-bioc-dada2
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego r-bioc-dada2:
- [r-bioc-dada2_1.14.1+dfsg-1.dsc]
- [r-bioc-dada2_1.14.1+dfsg.orig.tar.xz]
- [r-bioc-dada2_1.14.1+dfsg-1.debian.tar.xz]
Opiekun:
Original Maintainers:
- Debian R Packages Maintainers
- Steffen Moeller
Zasoby zewnętrzne:
- Strona internetowa [bioconductor.org]
Podobne pakiety:
sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.
Inne pakiety związane z r-bioc-dada2
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: libtbb2 (>= 2017~U7)
- parallelism library for C++ - runtime files
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- dep: r-api-3.5
- pakiet wirtualny udostępniany przez r-base-core
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- dep: r-api-bioc-3.10
- pakiet wirtualny udostępniany przez r-bioc-biocgenerics
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- dep: r-base-core (>= 3.6.2.20200221-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biocgenerics (>= 0.22.0)
- generic functions for Bioconductor
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- dep: r-bioc-biostrings (>= 2.42.1)
- GNU R string objects representing biological sequences
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- dep: r-bioc-iranges (>= 2.6.0)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-shortread (>= 1.32.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- dep: r-bioc-xvector (>= 0.16.0)
- BioConductor representation and manpulation of external sequences
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- dep: r-cran-ggplot2 (>= 2.1.0)
- implementation of the Grammar of Graphics
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- dep: r-cran-rcpp (>= 0.12.0)
- GNU R package for Seamless R and C++ Integration
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- dep: r-cran-rcppparallel (>= 4.3.0)
- parallel programming tools for Rcpp
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- dep: r-cran-reshape2 (>= 1.4.1)
- Flexibly reshape data: a reboot of the reshape package
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- sug: libjs-jquery
- JavaScript library for dynamic web applications
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
Pobieranie r-bioc-dada2
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 1 760,4 KiB | 2120 KiB | [lista plików] |