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Пакет: r-bioc-oligo (1.58.0+ds-1)

Ссылки для r-bioc-oligo

r-bioc-oligo

Ресурсы Trisquel:

Исходный код r-bioc-oligo:

Сопровождающий:

Original Maintainers:

  • Debian R Packages Maintainers
  • Steffen Moeller

Внешние ресурсы:

Подобные пакеты:

Preprocessing tools for oligonucleotide arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Другие пакеты, относящиеся к r-bioc-oligo

  • зависимости
  • рекомендации
  • предложения
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: r-api-4.0
    виртуальный пакет, предоставляемый r-base-core
  • dep: r-api-bioc-3.14
    виртуальный пакет, предоставляемый r-bioc-biocgenerics
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-affxparser (>= 1.39.4)
    Affymetrix File Parsing SDK
  • dep: r-bioc-affyio (>= 1.35.0)
    BioConductor tools for parsing Affymetrix data files
  • dep: r-bioc-biobase (>= 2.27.3)
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics (>= 0.13.11)
    generic functions for Bioconductor
  • dep: r-bioc-biostrings (>= 2.35.12)
    GNU R string objects representing biological sequences
  • dep: r-bioc-oligoclasses (>= 1.29.6)
    Classes for high-throughput arrays supported by oligo and crlmm
  • dep: r-bioc-preprocesscore (>= 1.29.0)
    BioConductor collection of pre-processing functions
  • dep: r-bioc-zlibbioc
    (Virtual) zlibbioc Bioconductor package
  • dep: r-cran-dbi (>= 0.3.1)
    GNU R package providing a generic database interface
  • dep: r-cran-ff
    Memory-Efficient Fast-Access Storage of Large Data
  • dep: r-cran-rsqlite (>= 1.0.0)
    Database Interface R driver for SQLite
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • sug: r-bioc-annotationdbi
    GNU R Annotation Database Interface for BioConductor
  • sug: r-bioc-biocstyle
    standard styles for vignettes and other Bioconductor documents
  • sug: r-bioc-biomart
    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  • sug: r-bioc-genefilter
    methods for filtering genes from microarray experiments
  • sug: r-bioc-limma
    linear models for microarray data
  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-rcolorbrewer
    GNU R package providing suitable color palettes
  • sug: r-cran-rcurl
    GNU R General network (HTTP/FTP/...) client interface
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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