Пакет: jellyfish (2.3.0-12ubuntu2)
Ссылки для jellyfish
Ресурсы Trisquel:
Исходный код jellyfish:
- [jellyfish_2.3.0-12ubuntu2.dsc]
- [jellyfish_2.3.0.orig.tar.gz]
- [jellyfish_2.3.0-12ubuntu2.debian.tar.xz]
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
- Étienne Mollier
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Другие пакеты, относящиеся к jellyfish
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.0-12ubuntu2)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
Загрузка jellyfish
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| arm64 | 693,3 Кб | 1968 Кб | [список файлов] |