Пакет: rna-star (2.7.10a+dfsg-1)
Ссылки для rna-star
Ресурсы Trisquel:
Исходный код rna-star:
- [rna-star_2.7.10a+dfsg-1.dsc]
- [rna-star_2.7.10a+dfsg.orig.tar.xz]
- [rna-star_2.7.10a+dfsg-1.debian.tar.xz]
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Steffen Moeller
- Andreas Tille
- Sascha Steinbiss
- Nilesh Patra
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
Другие пакеты, относящиеся к rna-star
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
Загрузка rna-star
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| arm64 | 749,5 Кб | 2449 Кб | [список файлов] |