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Пакет: ataqv (1.3.0+ds-1)

ATAC-seq QC and visualization

A toolkit for measuring and comparing ATAC-seq results, made in the Parker lab at the University of Michigan. They wrote it to help understand how well their ATAC-seq assays had worked, and to make it easier to spot differences that might be caused by library prep or sequencing.

Другие пакеты, относящиеся к ataqv

  • зависимости
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  • предложения
  • dep: fonts-font-awesome
    iconic font designed for use with Twitter Bootstrap
  • dep: libboost-chrono1.74.0 (>= 1.74.0)
    C++ representation of time duration, time point, and clocks
  • dep: libboost-filesystem1.74.0 (>= 1.74.0)
    filesystem operations (portable paths, iteration over directories, etc) in C++
  • dep: libboost-iostreams1.74.0 (>= 1.74.0)
    Boost.Iostreams Library
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
    dep: libgcc-s1 (>= 4.2) [arm64, ppc64el]
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libjs-jquery
    JavaScript library for dynamic web applications
  • dep: libjs-jquery-datatables
    jQuery plug-in that makes nice tables from different data sources
  • dep: libjs-jquery-datatables-extensions
    extensions for the jQuery plug-in for tables from different data sources
  • dep: libncurses6 (>= 6)
    shared libraries for terminal handling
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: node-d3
    Data-Driven Documents to visualize data
  • dep: node-normalize.css
    Modern alternative to CSS resets
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • sug: macs
    Model-based Analysis of ChIP-Seq on short reads sequencers
  • sug: picard-tools
    Command line tools to manipulate SAM and BAM files
  • sug: samtools
    processing sequence alignments in SAM, BAM and CRAM formats
  • sug: wget
    retrieves files from the web

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amd64 3 345,8 Кб6237 Кб [список файлов]
arm64 3 309,5 Кб6060 Кб [список файлов]
armhf 3 316,2 Кб5854 Кб [список файлов]
ppc64el 3 346,2 Кб6465 Кб [список файлов]