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Пакет: r-bioc-shortread (1.52.0-1)

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Другие пакеты, относящиеся к r-bioc-shortread

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  • dep: libc6 (>= 2.17)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: r-api-4.0
    виртуальный пакет, предоставляемый r-base-core
  • dep: r-api-bioc-3.14
    виртуальный пакет, предоставляемый r-bioc-biocgenerics
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biobase
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics (>= 0.23.3)
    generic functions for Bioconductor
  • dep: r-bioc-biocparallel
    BioConductor facilities for parallel evaluation
  • dep: r-bioc-biostrings (>= 2.47.6)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.15.2)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicalignments (>= 1.15.6)
    BioConductor representation and manipulation of short genomic alignments
  • dep: r-bioc-genomicranges (>= 1.31.8)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.13.12)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rhtslib
    HTSlib high-throughput sequencing library as GNU R package
  • dep: r-bioc-rsamtools (>= 1.31.2)
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-s4vectors (>= 0.17.25)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • dep: r-bioc-zlibbioc
    (Virtual) zlibbioc Bioconductor package
  • dep: r-cran-hwriter
    HTML Writer - Outputs R objects in HTML format
  • dep: r-cran-lattice
    GNU R package for 'Trellis' graphics
  • dep: r-cran-latticeextra
    GNU R package of additional graphical displays based on lattice
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • sug: r-bioc-biocstyle
    standard styles for vignettes and other Bioconductor documents
  • sug: r-bioc-biomart
    GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
  • sug: r-bioc-genomicfeatures
    GNU R tools for making and manipulating transcript centric annotations
  • sug: r-cran-runit
    GNU R package providing unit testing framework

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