Пакет: hisat2 (2.1.0-1)
Ссылки для hisat2
Ресурсы Trisquel:
Исходный код hisat2:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Michael R. Crusoe
Внешние ресурсы:
- Сайт [ccb.jhu.edu]
Подобные пакеты:
graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).
Другие пакеты, относящиеся к hisat2
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python
- interactive high-level object-oriented language (default version)
Загрузка hisat2
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 1 248,0 Кб | 5023 Кб | [список файлов] |