Skip to content
Sections
>> Trisquel >> Пакеты >> etiona >> python >> python-biom-format
[  etiona  ]
[ Источник: python-biom-format  ]

Пакет: python-biom-format (2.1.5+dfsg-7build2)

Biological Observation Matrix (BIOM) format (Python 2)

The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project.

The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome.

This package provides the BIOM format library for the Python 2 interpreter.

Другие пакеты, относящиеся к python-biom-format

  • зависимости
  • рекомендации
  • предложения
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: pyqi
    Python framework for wrapping general commands in multiple interfaces
  • dep: python
    interactive high-level object-oriented language (default version)
    dep: python (<< 2.8)
    dep: python (>= 2.7~)
  • dep: python-click
    Simple wrapper around optparse for powerful command line utilities - Python 2.7
  • dep: python-future
    single-source support for Python 3 and 2 - Python 2.x
  • dep: python-numpy (>= 1:1.10.0~b1)
    Numerical Python adds a fast array facility to the Python language
  • dep: python-numpy-abi9
    виртуальный пакет, предоставляемый python-numpy
  • dep: python-scipy
    scientific tools for Python

Загрузка python-biom-format

Загрузить для всех доступных архитектур
Архитектура Размер пакета В установленном виде Файлы
amd64 169,5 Кб1681 Кб [список файлов]
i386 163,1 Кб1679 Кб [список файлов]