Skip to content
Sections
>> Trisquel >> Пакеты >> etiona >> python >> python-pyfaidx
[  etiona  ]
[ Источник: python-pyfaidx  ]

Пакет: python-pyfaidx (0.4.8.1-1)

efficient random access to fasta subsequences for Python

Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.

This package provides the Python 2 modules to access fasta files.

Другие пакеты, относящиеся к python-pyfaidx

  • зависимости
  • рекомендации
  • предложения
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-pkg-resources
    Package Discovery and Resource Access using pkg_resources
  • dep: python-six
    Python 2 and 3 compatibility library (Python 2 interface)

Загрузка python-pyfaidx

Загрузить для всех доступных архитектур
Архитектура Размер пакета В установленном виде Файлы
all 19,4 Кб93 Кб [список файлов]