[ nabia ]
[ aramo ]
[ Источник: r-cran-alakazam ]
Пакет: r-cran-alakazam (0.3.0-1build1)
Ссылки для r-cran-alakazam
Ресурсы Trisquel:
Исходный код r-cran-alakazam:
- [r-cran-alakazam_0.3.0-1build1.dsc]
- [r-cran-alakazam_0.3.0.orig.tar.gz]
- [r-cran-alakazam_0.3.0-1build1.debian.tar.xz]
Сопровождающий:
Original Maintainers:
- Debian R Packages Maintainers
- Steffen Moeller
Внешние ресурсы:
- Сайт [cran.r-project.org]
Подобные пакеты:
Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation framework. This includes common tasks such as file I/O, basic DNA sequence manipulation, and interacting with V(D)J segment and gene annotations. * Providing an R interface for interacting with the output of the pRESTO and Change-O tool suites. * Performing lineage reconstruction on clonal populations of Ig sequences and analyzing the topology of the resultant lineage trees. * Performing clonal abundance and diversity analysis on lymphocyte repertoires. * Performing physicochemical property analyses of lymphocyte receptor sequences.
Другие пакеты, относящиеся к r-cran-alakazam
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
- dep: libc6 (>= 2.4) [armhf]
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: r-api-3.5
- виртуальный пакет, предоставляемый r-base-core
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- dep: r-base-core (>= 3.6.2.20200221-1build1)
- GNU R core of statistical computation and graphics system
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- dep: r-cran-ape
- GNU R package for Analyses of Phylogenetics and Evolution
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- dep: r-cran-dplyr (>= 0.8.1)
- GNU R grammar of data manipulation
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- dep: r-cran-ggplot2 (>= 2.0.0)
- implementation of the Grammar of Graphics
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- dep: r-cran-igraph (>= 1.0.0)
- GNU R network analysis and visualization
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- dep: r-cran-lazyeval
- GNU R lazy (non-standard) evaluation
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- dep: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
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- dep: r-cran-progress
- GNU R terminal progress bars
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- dep: r-cran-rcpp (>= 0.12.12)
- GNU R package for Seamless R and C++ Integration
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- dep: r-cran-readr
- GNU R package to read rectangular text data
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- dep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
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- dep: r-cran-scales
- Scale functions for visualization
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- dep: r-cran-seqinr
- GNU R biological sequences retrieval and analysis
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- dep: r-cran-stringi
- GNU R character string processing facilities
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- dep: r-cran-tibble
- GNU R Simple Data Frames
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- dep: r-cran-tidyr
- GNU R package to easily tidy data
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-testthat
- GNU R testsuite
Загрузка r-cran-alakazam
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 1 699,9 Кб | 2042 Кб | [список файлов] |
| armhf | 1 695,8 Кб | 2001 Кб | [список файлов] |