Пакет: jellyfish-examples (2.3.0-4build1)
Ссылки для jellyfish-examples
Ресурсы Trisquel:
Исходный код jellyfish:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
Внешние ресурсы:
- Сайт [www.cbcb.umd.edu]
Подобные пакеты:
count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains examples to test the package
Другие пакеты, относящиеся к jellyfish-examples
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
Загрузка jellyfish-examples
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 529,2 Кб | 2224 Кб | [список файлов] |