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Пакет: libseqlib1 (1.1.2+dfsg-6)

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

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  • dep: libgcc-s1 (>= 3.0) [amd64]
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    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libhts3 (>= 1.10)
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  • dep: libjsoncpp1 (>= 1.7.4)
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  • dep: libssw0 (>= 1.1)
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  • dep: libstdc++6 (>= 9)
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  • dep: zlib1g (>= 1:1.1.4)
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amd64 118,9 Кб404 Кб [список файлов]
armhf 103,1 Кб278 Кб [список файлов]