Пакет: libjellyfish-perl (2.3.0-4build1)
Ссылки для libjellyfish-perl
Ресурсы Trisquel:
Исходный код jellyfish:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
Внешние ресурсы:
- Сайт [www.cbcb.umd.edu]
Подобные пакеты:
count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Perl bindings of jellyfish.
Другие пакеты, относящиеся к libjellyfish-perl
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: perl (>= 5.30.0-9)
- Larry Wall's Practical Extraction and Report Language
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- dep: perlapi-5.30.0
- виртуальный пакет, предоставляемый perl-base
Загрузка libjellyfish-perl
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 57,9 Кб | 183 Кб | [список файлов] |