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[ Zdroj: htslib  ]

Balík: tabix (1.13+ds-2build1)

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Ostatné balíky súvisiace s balíkom tabix

  • závisí
  • odporúča
  • navrhuje
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libdeflate0 (>= 1.0)
    fast, whole-buffer DEFLATE-based compression and decompression
  • dep: libhtscodecs2 (>= 1.0)
    Custom compression for CRAM and others
  • dep: liblzma5 (>= 5.1.1alpha+20120614)
    XZ-format compression library
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Stiahnuť tabix

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 342.3 kB1151 kB [zoznam súborov]