Balík: alien-hunter (1.7-8)
Odkazy pre alien-hunter
Zdroje Trisquel:
Stiahnuť zdrojový balík alien-hunter:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Andreas Tille
Externé zdroje:
- Domovská stránka [www.sanger.ac.uk]
Podobné balíky:
Interpolated Variable Order Motifs to identify horizontally acquired DNA
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.
Ostatné balíky súvisiace s balíkom alien-hunter
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- dep: libbiojava-java
- Java API to biological data and applications (default version)
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- dep: libbytecode-java
- Java bytecode manipulation library
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- dep: libcommons-cli-java
- Command line arguments and options parsing library
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- dep: libcommons-collections3-java
- Apache Commons Collections - Extended Collections API for Java
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- dep: libcommons-dbcp-java
- Database Connection Pooling Services
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- dep: libcommons-pool-java
- pooling implementation for Java objects
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- sug: bioperl
- Perl tools for computational molecular biology
Stiahnuť alien-hunter
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| all | 27.7 kB | 112 kB | [zoznam súborov] |