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Balík: libtfbs-perl (0.7.1+ds-2build1)

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Ostatné balíky súvisiace s balíkom libtfbs-perl

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  • odporúča
  • navrhuje
  • dep: bioperl
    Perl tools for computational molecular biology
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libdbi-perl
    Perl Database Interface (DBI)
  • dep: libwww-perl
    simple and consistent interface to the world-wide web
  • dep: pdl (>= 1:2.072-1build1)
    perl data language: Perl extensions for numerics
  • dep: pdlapi-20
    virtuálny balík poskytovaný balíkom pdl
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.34.0
    virtuálny balík poskytovaný balíkom perl-base

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