Skip to content
Sections
>> Trisquel >> Balíky >> aramo >> science >> examl
etiona  ] [  nabia  ] [  aramo  ]
[ Zdroj: examl  ]

Balík: examl (3.0.22-3)

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

Ostatné balíky súvisiace s balíkom examl

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libopenmpi3 (>= 4.1.2)
    high performance message passing library -- shared library
  • dep: openmpi-bin
    high performance message passing library -- binaries

Stiahnuť examl

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 952.4 kB5718 kB [zoznam súborov]
arm64 811.6 kB1503 kB [zoznam súborov]
armhf 815.9 kB1509 kB [zoznam súborov]
ppc64el 848.2 kB1727 kB [zoznam súborov]