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Balík: glam2 (1064-9)

Odkazy pre glam2

glam2

Zdroje Trisquel:

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Správca:

Original Maintainers:

  • Debian Med Packaging Team (Konferencia)
  • Steffen Moeller
  • Charles Plessy
  • Andreas Tille

Externé zdroje:

Podobné balíky:

gapped protein motifs from unaligned sequences

GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs.

This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences.

The package includes these programs:

 glam2:       discovering motifs shared by a set of sequences;
 glam2scan:   finding matches, in a sequence database, to a motif discovered
              by glam2;
 glam2format: converting glam2 motifs to  standard alignment formats;
 glam2mask:   masking glam2 motifs out of sequences, so that weaker motifs
              can be found;
 glam2-purge: removing highly similar members of a set of sequences.

In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.

Ostatné balíky súvisiace s balíkom glam2

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libfftw3-double3 (>= 3.3.5)
    Library for computing Fast Fourier Transforms - Double precision

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Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 230.3 kB514 kB [zoznam súborov]
arm64 223.1 kB498 kB [zoznam súborov]
armhf 214.4 kB401 kB [zoznam súborov]
ppc64el 241.3 kB762 kB [zoznam súborov]