Skip to content
Sections
>> Trisquel >> Balíky >> etiona >> libs >> libfreecontact0v5
etiona  ] [  nabia  ] [  aramo  ]
[ Zdroj: freecontact  ]

Balík: libfreecontact0v5 (1.0.21-6build2)

fast protein contact predictor library

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the shared library implementing freecontact.

Ostatné balíky súvisiace s balíkom libfreecontact0v5

  • závisí
  • odporúča
  • navrhuje

Stiahnuť libfreecontact0v5

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 69.3 kB178 kB [zoznam súborov]
i386 58.6 kB161 kB [zoznam súborov]