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Balík: python-pbgenomicconsensus (2.1.0-1)

Pacific Biosciences variant and consensus caller (Python 2)

The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides.

This package is part of the SMRTAnalysis suite and provides the Python 2 backend library.

Ostatné balíky súvisiace s balíkom python-pbgenomicconsensus

  • závisí
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  • navrhuje
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-h5py
    general-purpose Python interface to hdf5 (Python 2)
  • dep: python-numpy
    Numerical Python adds a fast array facility to the Python language
  • dep: python-pbcommand
    common command-line interface for Pacific Biosciences analysis modules
  • dep: python-pbconsensuscore
    algorithms for PacBio multiple sequence consensus -- Python 2
  • dep: python-pbcore
    Python library for processing PacBio data files
  • sug: python-consensuscore2
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