Balík: python3-dna-jellyfish (2.2.8-3build1)
Odkazy pre python3-dna-jellyfish
Zdroje Trisquel:
Stiahnuť zdrojový balík jellyfish:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
Externé zdroje:
- Domovská stránka [www.cbcb.umd.edu]
Podobné balíky:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Ostatné balíky súvisiace s balíkom python3-dna-jellyfish
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libjellyfish-2.0-2
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.7)
- dep: python3 (>= 3.6~)
Stiahnuť python3-dna-jellyfish
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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amd64 | 47.0 kB | 168 kB | [zoznam súborov] |