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Balík: centrifuge (1.0.3~beta-2)

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Ostatné balíky súvisiace s balíkom centrifuge

  • závisí
  • odporúča
  • navrhuje
  • dep: hisat2
    graph-based alignment of short nucleotide reads to many genomes
  • dep: jellyfish
    count k-mers in DNA sequences
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)

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Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 522.5 kB1758 kB [zoznam súborov]