Balík: kraken (1.1-2)
Odkazy pre kraken
Zdroje Trisquel:
Stiahnuť zdrojový balík kraken:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Andreas Tille
Externé zdroje:
- Domovská stránka [ccb.jhu.edu]
Podobné balíky:
assigning taxonomic labels to short DNA sequences
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.
In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.
Ostatné balíky súvisiace s balíkom kraken
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- dep: jellyfish1
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
tiež virtuálny balík poskytovaný balíkom libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Stiahnuť kraken
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 735.8 kB | 1503 kB | [zoznam súborov] |
| i386 | 742.0 kB | 1517 kB | [zoznam súborov] |