Balík: smalt (0.7.6-7)
Odkazy pre smalt
Zdroje Trisquel:
Stiahnuť zdrojový balík smalt:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Andreas Tille
Externé zdroje:
- Domovská stránka [www.sanger.ac.uk]
Podobné balíky:
Sequence Mapping and Alignment Tool
SMALT efficiently aligns DNA sequencing reads with a reference genome. Reads from a wide range of sequencing platforms, for example Illumina, Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including paired reads.
The software employs a perfect hash index of short words (< 20 nucleotides long), sampled at equidistant steps along the genomic reference sequences.
For each read, potentially matching segments in the reference are identified from seed matches in the index and subsequently aligned with the read using a banded Smith-Waterman algorithm.
The best gapped alignments of each read is reported including a score for the reliability of the best mapping. The user can adjust the trade-off between sensitivity and speed by tuning the length and spacing of the hashed words.
A mode for the detection of split (chimeric) reads is provided. Multi-threaded program execution is supported.
Ostatné balíky súvisiace s balíkom smalt
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- dep: libbambamc0
- Runtime library for reading and writing BAM (genome alignment) files
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
tiež virtuálny balík poskytovaný balíkom libc6-udeb
- dep: libc6 (>= 2.7) [i386]
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- dep: zlib1g (>= 1:1.2.0.2)
- compression library - runtime
Stiahnuť smalt
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 110.5 kB | 289 kB | [zoznam súborov] |
| i386 | 123.4 kB | 328 kB | [zoznam súborov] |