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Balík: ssw-align (1.1-1)

Smith-Waterman aligner based on libssw

This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.

Ostatné balíky súvisiace s balíkom ssw-align

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libssw0 (= 1.1-1)
    fast SIMD parallelized implementation of the Smith-Waterman algorithm
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Stiahnuť ssw-align

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amd64 11.7 kB37 kB [zoznam súborov]