Balík: tnseq-transit (2.1.1-1)
Odkazy pre tnseq-transit
Zdroje Trisquel:
Stiahnuť zdrojový balík tnseq-transit:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Andreas Tille
Externé zdroje:
- Domovská stránka [pythonhosted.org]
Podobné balíky:
statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It includes various statistical calculations of essentiality of genes or genomic regions (including conditional essentiality between 2 conditions). These methods were developed and tested as a collaboration between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1 or Tn5 datasets.
TRANSIT assumes you have already done pre-processing of raw sequencing files (.fastq) and extracted read counts into a .wig formatted file. The .wig file should contain the counts at all sites where an insertion could take place (including sites with no reads). For Himar1 datasets this is all TA sites in the genome. For Tn5 datasets this would be all nucleotides in the genome.
Ostatné balíky súvisiace s balíkom tnseq-transit
|
|
|
-
- dep: python
- interactive high-level object-oriented language (default version)
- dep: python (<< 2.8)
- dep: python (>= 2.7)
-
- dep: python-matplotlib
- Python based plotting system in a style similar to Matlab
-
- dep: python-numpy
- Numerical Python adds a fast array facility to the Python language
-
- dep: python-pillow
- virtuálny balík poskytovaný balíkom python-pil
-
- dep: python-pkg-resources
- Package Discovery and Resource Access using pkg_resources
-
- dep: python-scipy
- scientific tools for Python
-
- dep: python-wxgtk3.0
- Python interface to the wxWidgets Cross-platform C++ GUI toolkit
Stiahnuť tnseq-transit
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
---|---|---|---|
amd64 | 6,326.1 kB | 37999 kB | [zoznam súborov] |
i386 | 6,326.1 kB | 37999 kB | [zoznam súborov] |