Skip to content
Sections
>> Trisquel >> Balíky >> etiona >> science >> voronota
etiona  ] [  nabia  ] [  aramo  ]
[ Zdroj: voronota  ]

Balík: voronota (1.18.1877-1)

Voronoi diagram-based tool to find atom contacts

The analysis of macromolecular structures often requires a comprehensive definition of atomic neighborhoods. Such a definition can be based on the Voronoi diagram of balls, where each ball represents an atom of some van der Waals radius. Voronota is a software tool for finding all the vertices of the Voronoi diagram of balls. Such vertices correspond to the centers of the empty tangent spheres defined by quadruples of balls. Voronota is especially suitable for processing three-dimensional structures of biological macromolecules such as proteins and RNA.

Since version 1.2 Voronota also uses the Voronoi vertices to construct inter-atom contact surfaces and solvent accessible surfaces. Voronota provides tools to query contacts, generate contacts graphics, compare contacts and evaluate quality of protein structural models using contacts.

Ostatné balíky súvisiace s balíkom voronota

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.4)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Stiahnuť voronota

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 807.3 kB3824 kB [zoznam súborov]
i386 850.0 kB3931 kB [zoznam súborov]