Skip to content
Sections
>> Trisquel >> Balíky >> nabia >> science >> samtools
[  etiona  ] [  nabia  ] [  aramo  ]
[ Zdroj: samtools  ]

Balík: samtools (1.10-3)

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Ostatné balíky súvisiace s balíkom samtools

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libncurses6 (>= 6)
    shared libraries for terminal handling
  • dep: libtinfo6 (>= 6)
    shared low-level terminfo library for terminal handling
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • rec: cwltool
    Common Workflow Language reference implementation
  • rec: python3
    interactive high-level object-oriented language (default python3 version)

Stiahnuť samtools

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
armhf 457.1 kB911 kB [zoznam súborov]