Balíky softvéru v „nabia“, Subsekcia science
- 3depict (0.0.22-1.2build1)
- visualisation and analysis for single valued point data
- abacas (1.3.1-6)
- close gaps in genomic alignments from short reads
- acedb-other (4.9.39+dfsg.02-4build1)
- retrieval of DNA or protein sequences
- acedb-other-belvu (4.9.39+dfsg.02-4build1)
- transitional package for belvu
- acedb-other-belvu
- virtuálny balík poskytovaný balíkom belvu
- acedb-other-dotter (4.9.39+dfsg.02-4build1)
- transitional package for dotter
- acedb-other-dotter
- virtuálny balík poskytovaný balíkom dotter
- aces3 (3.0.8-6build1)
- Advanced Concepts in Electronic Structure III
- aces3-data (3.0.8-6build1)
- Advanced Concepts in Electronic Structure III
- achilles (2-9build1)
- Artificial life and evolution simulator
- adapterremoval (2.3.1-3build1)
- rapid adapter trimming, identification, and read merging of gene sequences
- adapterremoval-examples (2.3.1-3build1)
- rapid adapter trimming, identification, and read merging (example data)
- adms (2.3.6-2)
- Automatic device model synthesizer for Verilog-AMS
- adun-core (0.81-13build1)
- Molecular Simulator
- adun.app (0.81-13build1)
- Molecular Simulator for GNUstep (GUI)
- aegean (0.16.0+dfsg-2)
- integrated genome analysis toolkit
- aeskulap (0.2.2-beta2+git20190406.ef77f01-1build1)
- medical image viewer and DICOM network client
- aevol (5.0+ds-1build1)
- digital genetics model to run Evolution Experiments in silico
- aghermann (1.1.2-3build1)
- Sleep-research experiment manager
- aladin (10.076+dfsg-1)
- Interactive sky atlas for astronomical images and datasets
- alfa (1.0-3build2)
- Automated Line Fitting Algorithm
- algotutor (0.8.6-3)
- program for observing the intermediate steps of algorithm
- alien-hunter (1.7-7)
- Interpolated Variable Order Motifs to identify horizontally acquired DNA
- altree (1.3.1-9)
- program to perform phylogeny-based association and localization analysis
- altree-examples (1.3.1-9)
- example files for ALTree
- amap-align (2.2+git20080214.600fc29+dfsg-1build1)
- Protein multiple alignment by sequence annealing
- ampliconnoise (1.29-8)
- removal of noise from 454 sequenced PCR amplicons
- andi (0.12-4build1)
- Efficient Estimation of Evolutionary Distances
- anfo (0.98-7build2)
- Short Read Aligner/Mapper from MPG
- aoflagger (2.14.0-2ubuntu2)
- Find RFI in radio astronomical observations
- apbs (1.4-1ubuntu1)
- Adaptive Poisson Boltzmann Solver
- apertium-af-nl (0.3.0-1)
- Transitional dummy package for apertium-afr-nld
- apertium-afr-nld (0.3.0-1)
- Apertium translation data for the Afrikaans-Dutch pair
- apertium-anaphora (0.0.4-1build1)
- Anaphora resolution module
- apertium-apy (0.11.5-1)
- Apertium APY service
- apertium-arg (0.1.2~r65494-2)
- Apertium single language data for Aragonese
- apertium-bel (0.1.0~r81357-2)
- Apertium single language data for Belarusian
- apertium-bel-rus (0.2.1-1)
- Apertium translation data for the Belarusian-Russian pair
- apertium-br-fr (0.5.0~r61325-4)
- Apertium linguistic data to translate between Breton and French
- apertium-ca-it (0.1.1~r57554-2)
- Apertium translation data for the Catalan-Italian pair
- apertium-crh (0.2.0~r83161-2)
- Apertium single language data for Crimean Tatar
- apertium-crh-tur (0.3.0~r83159-2)
- Apertium translation data for the Crimean Tatar-Turkish pair
- apertium-cy-en (0.1.1~r57554-5)
- Apertium translation data for the Welsh-English pair
- apertium-dan (0.6.0-2)
- Apertium single language data for Danish
- apertium-dan-nor (1.4.1-1)
- Apertium translation data for the Danish-Norwegian pair
- apertium-dev (3.6.1-1build2)
- Development tools and library for Apertium
- apertium-en-gl (0.5.2~r57551-3)
- Apertium translation data for the English-Galician pair
- apertium-eng-cat (1.0.1-1)
- Apertium translation data for the English-Catalan pair
- apertium-eo-en (1.0.0~r63833-3)
- Apertium linguistic data to translate between Esperanto and English
- apertium-eo-fr (0.9.0~r57551-3)
- Apertium translation data for the Esperanto-French pair
- apertium-es-ast (1.1.0~r51165-3)
- Apertium translation data for the Spanish-Asturian pair
- apertium-es-it (0.2.0~r78826-2)
- Transitional dummy package for apertium-spa-ita
- apertium-eu-en (0.3.1~r56205-3)
- Apertium translation data for the Basque-English pair
- apertium-eval-translator (1.2.1-2)
- Evaluate machine translation output against reference
- apertium-fra (1.5.0-1)
- Apertium single language data for French
- apertium-fra-cat (1.7.0-1)
- Apertium translation data for the French-Catalan pair
- apertium-hbs (0.5.0~r68212-3)
- Apertium single language data for Serbo-Croatian
- apertium-hbs-eng (0.1.0~r57598-2)
- Apertium translation data for the Serbo-Croatian - English pair
- apertium-hbs-mkd (0.1.0~r76450-4)
- Apertium translation data for the Serbo-Croatian-Macedonian pair
- apertium-hbs-slv (0.1.0~r59294-2)
- Apertium translation data for the Serbo-Croatian-Slovenian pair
- apertium-hin (0.1.0~r59158-2)
- Apertium single language data for Hindi
- apertium-id-ms (0.1.1~r57551-2)
- Apertium translation data for the Indonesian-Malay pair
- apertium-is-sv (0.1.0~r76450-3)
- Apertium translation data for the Icelandic-Swedish pair
- apertium-isl (0.1.0~r65494-2)
- Apertium single language data for Icelandic
- apertium-isl-eng (0.1.0~r66083-3)
- Apertium translation data for the Icelandic-English pair
- apertium-ita (0.10.0~r82237-2)
- Apertium single language data for Italian
- apertium-kaz (0.1.0~r61338-2)
- Apertium single language data for Kazakh
- apertium-kaz-tat (0.2.1~r57554-2)
- Apertium translation data for the Kazakh-Tatar pair
- apertium-lex-tools (0.2.3-1build2)
- Constraint-based lexical selection module
- apertium-mk-bg (0.2.0~r49489-3)
- Apertium translation data for the Macedonian-Bulgarian pair
- apertium-mk-en (0.1.1~r57554-3)
- Apertium translation data for the Macedonian-English pair
- apertium-mlt-ara (0.2.0~r62623-2)
- Apertium translation data for the Maltese-Arabic pair
- apertium-nno (1.0.0-2)
- Apertium single language data for Norwegian Nynorsk
- apertium-nno-nob (1.3.0-1)
- Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
- apertium-nob (1.0.0-2)
- Apertium single language data for Norwegian Bokmål
- apertium-oci (0.1.0-1)
- Apertium single language data for Occitan
- apertium-oci-fra (0.3.0-1)
- Apertium translation data for the Occitan-French pair
- apertium-pol (0.1.1-2)
- Apertium single language data for Polish
- apertium-por-cat (0.9.0-1)
- Apertium translation data for the Portuguese-Catalan pair
- apertium-recursive (0.0.1-1build1)
- Apertium recursive structural transfer module
- apertium-rus (0.2.0~r82706-1)
- Apertium single language data for Russian
- apertium-separable (0.3.3-1build1)
- Reordering separable/discontiguous multiwords
- apertium-sme-nob (0.6.0~r61921-2)
- Apertium translation data for the Northern Sami-Norwegian Bokmål pair
- apertium-spa (1.1.0~r79716-2)
- Apertium single language data for Spanish
- apertium-spa-arg (0.4.0~r64399-2)
- Apertium translation data for the Spanish-Aragonese pair
- apertium-spa-cat (2.2.0-1)
- Apertium translation data for the Spanish-Catalan pair
- apertium-spa-ita (0.2.0~r78826-2)
- Apertium translation data for the Spanish-Italian pair
- apertium-swe (0.8.0-2)
- Apertium single language data for Swedish
- apertium-swe-dan (0.8.1-1)
- Apertium translation data for the Swedish-Danish pair
- apertium-swe-nor (0.3.1-1)
- Apertium translation data for the Swedish-Norwegian pair
- apertium-szl (0.1.0-1)
- Apertium single language data for Silesian
- apertium-tat (0.1.0~r60887-2)
- Apertium single language data for Tatar
- apertium-tur (0.2.0~r83161-2)
- Apertium single language data for Turkish
- apertium-ukr (0.1.0~r82563-2)
- Apertium single language data for Ukrainian
- apertium-urd (0.1.0~r61311-2)
- Apertium single language data for Urdu
- apertium-urd-hin (0.1.0~r64379-2)
- Apertium translation data for the Urdu-Hindi pair
- aragorn (1.2.38-2)
- tRNA and tmRNA detection in nucleotide sequences
- arden (1.0-5)
- specificity control for read alignments using an artificial reference
- ariba (2.14.4+ds-2build1)
- Antibiotic Resistance Identification By Assembly
- art-nextgen-simulation-tools (20160605+dfsg-4)
- simulation tools to generate synthetic next-generation sequencing reads
- art-nextgen-simulation-tools-profiles (20160605+dfsg-4)
- profiles for art simulation tools
- artemis (17.0.1+dfsg-2)
- genome browser and annotation tool
- artfastqgenerator (0.0.20150519-3)
- outputs artificial FASTQ files derived from a reference genome
- artfastqgenerator-examples (0.0.20150519-3)
- ou7puts artificial FASTQ files derived from a reference genome (examples)
- asdftool (2.5.1-1)
- Command line tool to manipulate ASDF scientific data files
- ase (3.19.0-1)
- Atomic Simulation Environment
- assemblytics (1.0+ds-2)
- detect and analyze structural variants from a genome assembly
- astro-tasks (2.1)
- Debian Astronomy Pure Blend (tasksel tasks)
- astromatic (1.2)
- Astronomical pipeline software collection
- astrometry-data-tycho2 (2-4)
- Astrometry.net Tycho-2 index files
- astrometry-data-tycho2-07 (2-4)
- Astrometry.net Tycho-2 index files (22'-30')
- astrometry-data-tycho2-07-bigendian (2-4)
- Astrometry.net Tycho-2 big endian index files (22'-30')
- astrometry-data-tycho2-07-littleendian (2-4)
- Astrometry.net Tycho-2 little endian index files (22'-30')
- astrometry-data-tycho2-08 (2-4)
- Astrometry.net Tycho-2 index files (30'-44')
- astrometry-data-tycho2-08-bigendian (2-4)
- Astrometry.net Tycho-2 big endian index files (30'-44')
- astrometry-data-tycho2-08-littleendian (2-4)
- Astrometry.net Tycho-2 little endian index files (30'-44')
- astrometry-data-tycho2-09 (2-4)
- Astrometry.net Tycho-2 index files (44'-60')
- astrometry-data-tycho2-09-bigendian (2-4)
- Astrometry.net Tycho-2 big endian index files (44'-60')
- astrometry-data-tycho2-09-littleendian (2-4)
- Astrometry.net Tycho-2 little endian index files (44'-60')
- astrometry-data-tycho2-10-19 (2-4)
- Astrometry.net Tycho-2 index files (60'-2000')
- astrometry-data-tycho2-10-19-bigendian (2-4)
- Astrometry.net Tycho-2 big endian index files (60'-2000')
- astrometry-data-tycho2-10-19-littleendian (2-4)
- Astrometry.net Tycho-2 little endian index files (60'-2000')
- astrometry.net (0.78+dfsg-3build2)
- Astrometry plate solver
- astronomical-almanac (5.6-6)
- astronomical almanac - calculate planet and star positions
- atropos (1.1.24+dfsg-1build1)
- NGS read trimming tool that is specific, sensitive, and speedy
- augustus (3.3.3+dfsg-2build1)
- gene prediction in eukaryotic genomes
- augustus-data (3.3.3+dfsg-2build1)
- data files for AUGUSTUS
- autodock (4.2.6-7build1)
- analysis of ligand binding to protein structure
- autodock-getdata (4.2.6-7build1)
- instructions for getData to collect compounds
- autodock-test (4.2.6-7build1)
- test files for AutoDock
- autodock-vina (1.1.2-5build3)
- docking of small molecules to proteins
- autogrid (4.2.6-7build1)
- pre-calculate binding of ligands to their receptor
- autogrid-test (4.2.6-7build1)
- test files for AutoGrid
- avce00 (2.0.0-7)
- Conversion of ESRI Arcinfo Vector Coverage in E00 format
- avogadro (1.93.0-1)
- Molecular Graphics and Modelling System
- avogadro-utils (1.93.0-3)
- Molecular Graphics and Modelling System (library)
- axe-demultiplexer (0.3.3+dfsg-1)
- Trie-based DNA sequencing read demultiplexer
- bagel (1.2.2-1ubuntu1)
- Computational Chemistry Package
- baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1build1)
- software package for designing hybrid enrichment probes
- bali-phy (3.4.1+dfsg-2build1)
- Bayesian Inference of Alignment and Phylogeny
- ballview (1.5.0+git20180813.37fc53c-4build2)
- free molecular modeling and molecular graphics tool
- bamtools (2.5.1+dfsg-5build1)
- toolkit for manipulating BAM (genome alignment) files
- bandage (0.8.1-1build1)
- Bioinformatics Application for Navigating De novo Assembly Graphs Easily
- barrnap (0.9+dfsg-1)
- rapid ribosomal RNA prediction
- bart (0.5.00-1)
- tools for computational magnetic resonance imaging
- bart-view (0.1.00-2)
- viewer for multi-dimensional complex-valued data
- bbmap (38.79+dfsg-1)
- short read aligner and other bioinformatic tools
- bbmap-jni (38.79+dfsg-1)
- short read aligner and other bioinformatic tools - JNI library
- bcalm (2.2.1-2build1)
- de Bruijn compaction in low memory
- bcftools (1.10.2-2)
- genomic variant calling and manipulation of VCF/BCF files
- beads (1.1.18+dfsg-4build1)
- 2-DE electrophoresis gel image spot detection
- beagle (5.1-191125+dfsg-1)
- Genotype calling, genotype phasing and imputation of ungenotyped markers
- beast2-mcmc (2.6.0+dfsg-1)
- Bayesian MCMC phylogenetic inference
- bedops (2.4.37+dfsg-2build1)
- high-performance genomic feature operations
- bedtools (2.27.1+dfsg-4ubuntu1)
- suite of utilities for comparing genomic features
- bedtools-test (2.27.1+dfsg-4ubuntu1)
- test data for the bedtools package
- belvu (4.44.1+dfsg-3build1)
- multiple sequence alignment viewer and phylogenetic tool
- berkeley-express (1.5.3+dfsg-1build1)
- Streaming quantification for high-throughput sequencing
- bio-eagle (2.4.1-1build2)
- Haplotype phasing within a genotyped cohort or using a phased reference panel
- bio-eagle-examples (2.4.1-1build2)
- Examples for bio-eagle
- bio-rainbow (2.0.4+dfsg-1)
- clustering and assembling short reads for bioinformatics
- biobambam2 (2.0.95-1)
- tools for early stage alignment file processing
- biogenesis (0.8-3)
- artificial life program that simulates evolution of organisms
- bioperl (1.7.7-1)
- Perl tools for computational molecular biology
- bioperl-run (1.7.3-3)
- BioPerl wrappers: scripts
- biosquid (1.9g+cvs20050121-11)
- utilities for biological sequence analysis
- biosyntax (1.0.0b-1)
- Syntax Highlighting for Computational Biology (metapackage)
- biosyntax-common (1.0.0b-1)
- Syntax Highlighting for Computational Biology (common files)
- biosyntax-example (1.0.0b-1)
- Syntax Highlighting for Computational Biology (example)
- biosyntax-gedit (1.0.0b-1)
- Syntax Highlighting for Computational Biology (gedit)
- biosyntax-less (1.0.0b-1)
- Syntax Highlighting for Computational Biology (less)
- biosyntax-vim (1.0.0b-1)
- Syntax Highlighting for Computational Biology (vim)
- bitseq (0.7.5+dfsg-5build1)
- Bayesian Inference of Transcripts from Sequencing Data
- bitwise (0.40-1)
- Interactive bitwise operation in ncurses
- blasr (5.3.3+dfsg-4build1)
- mapping single-molecule sequencing reads
- blast2 (1:2.9.0-2)
- transitional dummy package to ncbi-blast+-legacy
- blinken (4:19.12.3-0ubuntu1)
- KDE version of the Simon electronic memory game
- blixem (4.44.1+dfsg-3build1)
- interactive browser of sequence alignments
- bmt (0.6-1)
- software analysis benchmarking toolkit
- bodr (10-2)
- Blue Obelisk Data Repository
- boinc-app-seti (8.00~svn4035-1build1)
- SETI@home application for the BOINC client
- boinc-app-seti-graphics (8.00~svn4035-1build1)
- SETI@home application for the BOINC client (with graphics)
- bolt-lmm (2.3.4+dfsg-2build1)
- Efficient large cohorts genome-wide Bayesian mixed-model association testing
- bolt-lmm-example (2.3.4+dfsg-2build1)
- Examples for bolt-lmm
- boolector (1.5.118.6b56be4.121013-1build1)
- SMT solver for bit-vectors and arrays
- bowtie (1.2.3+dfsg-4build1)
- Ultrafast memory-efficient short read aligner
- bowtie-examples (1.2.3+dfsg-4build1)
- Examples for bowtie, the ultrafast memory-efficient short read aligner
- bowtie2 (2.3.5.1-6build1)
- ultrafast memory-efficient short read aligner
- bowtie2-examples (2.3.5.1-6build1)
- Examples for bowtie2
- boxshade (3.3.1-13)
- Pretty-printing of multiple sequence alignments
- bppphyview (0.6.1-1build1)
- Bio++ Phylogenetic Viewer
- bppsuite (2.4.1-1build1)
- Bio++ program suite
- bppsuite-examples (2.4.1-1build1)
- Examples for Bio++ program suite
- brig (0.95+dfsg-3)
- BLAST Ring Image Generator
- bwa (0.7.17-4)
- Burrows-Wheeler Aligner
- cafeobj (1.6.0-2)
- new generation algebraic specification and programming language
- cafeobj-mode (1.6.0-2)
- Emacs major mode for editing CafeOBJ source code
- caffe-tools-cpu (1.0.0+git20180821.99bd997-5build3)
- Tools for fast, open framework for Deep Learning (CPU_ONLY)
- calculix-ccx (2.11-1build3)
- Three-Dimensional Structural Finite Element Program
- calculix-cgx (2.11+dfsg-1build1)
- Calculix cgx is a 3-dimensional pre- and post-processor for fem
- callisto (1.1.0-2)
- Daemon for e-Callisto hardware
- camitk-actionstatemachine (4.1.2-4build1)
- pipeline replay application for the CamiTK library
- camitk-config (4.1.2-4build1)
- Computer Assisted Medical Intervention Tool Kit - config
- camitk-imp (4.1.2-4build1)
- workbench application for the CamiTK library
- canu (1.9+dfsg-1build1)
- single molecule sequence assembler for genomes
- casacore-data-igrf (12-1)
- International Geomagnetic Reference Field data for casacore
- casacore-data-jpl-de200 (2007.07.05+ds.1-1)
- Jet Propulsion Laboratory Development Ephemeris DE200 for casacore
- casacore-data-jpl-de405 (2007.07.05+ds.1-1)
- Jet Propulsion Laboratory Development Ephemeris DE405 for casacore
- casacore-data-lines (0+git2016.11.26-2)
- Table of spectral line frequencies for casacore
- casacore-data-observatories (0+git2018.12.08-2)
- Table of radio observatory coordinates for casacore
- casacore-data-sources (2-2)
- Table of ICRF reference source coordinates for casacore
- casacore-data-tai-utc (1.2)
- Difference table between TAI and UTC for casacore
- casacore-tools (3.2.1-4build3)
- Tools built with CASA
- cassbeam (1.1-2)
- Cassegrain antenna modelling
- cassiopee (1.0.9-2build1)
- index and search tool in genomic sequences
- cba (0.3.6-5build1)
- Continuous Beam Analysis
- cbflib-bin (0.9.5.18+dfsg1-1build1)
- utilities to manipulate CBF files
- cbmc (5.10-5ubuntu1)
- bounded model checker for C and C++ programs
- cclib (1.6.2-2)
- Parsers and algorithms for computational chemistry
- cct (20170919+dfsg-1)
- visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
- cct-examples (20170919+dfsg-1)
- example data for testing the package cct
- cd-hit (4.8.1-2build1)
- suite of programs designed to quickly group sequences
- cdbfasta (0.99-20100722-6build1)
- Constant DataBase indexing and retrieval tools for multi-FASTA files
- centrifuge (1.0.3-3build1)
- rapid and memory-efficient system for classification of DNA sequences
- cernlib (20061220+dfsg3-4.4build1)
- CERNLIB data analysis suite - general use metapackage
- cernlib-core (20061220+dfsg3-4.4build1)
- CERNLIB data analysis suite - main libraries and programs
- cernlib-core-dev (20061220+dfsg3-4.4build1)
- CERNLIB data analysis suite - core development files
- (20061220+dfsg3-4.4build1)
- CERNLIB data analysis suite - extra programs
- cernlib-montecarlo (20061220+dfsg3-3.1build4)
- CERNLIB Monte Carlo libraries
- cg3 (1.3.1-2build3)
- Tools for using the 3rd edition of Constraint Grammar (CG-3)
- cg3-dev (1.3.1-2build3)
- Metapackage providing both CG-3 CLI dev tools and dev library
- cgns-convert (3.4.0-1)
- CFD General Notation System - Conversion tools
- cgview (0.0.20100111-4)
- Circular Genome Viewer
- changeo (0.4.6-1)
- Repertoire clonal assignment toolkit (Python 3)
- checkit-tiff (0.2.3-2)
- conformance checker for baseline TIFFs
- chemical-structures (2.2.dfsg.0-15)
- set of molecular structures in open formats
- chemps2 (1.8.9-1build3)
- Executable to call libchemps2-3 from the command line
- chemtool (1.6.14-5)
- chemical structures drawing program
- chimeraslayer (20101212+dfsg1-3)
- detects likely chimeras in PCR amplified DNA
- chromhmm (1.20+dfsg-1)
- Chromatin state discovery and characterization
- chromimpute (1.0.3+dfsg-1)
- Large-scale systematic epigenome imputation
- circlator (1.5.6-1)
- circularize genome assemblies
- circos (0.69.9+dfsg-1)
- plotter for visualizing data
- circos-tools (0.23-1)
- plotter for visualizing data - helper utilities
- ckon (0.7.1-3build13)
- automatic build tool for ROOT data analysis software
- clearcut (1.0.9-5)
- extremely efficient phylogenetic tree reconstruction
- clonalframe (1.2-10build1)
- inference of bacterial microevolution using multilocus sequence data
- clonalframeml (1.12-1)
- Efficient Inference of Recombination in Whole Bacterial Genomes
- clonalorigin (1.0-3build1)
- inference of homologous recombination in bacteria using whole genome sequences
- clustalo (1.2.4-4build1)
- General purpose multiple sequence alignment program for proteins
- clustalw (2.1+lgpl-6build1)
- global multiple nucleotide or peptide sequence alignment
- cmor-tables (3.3-1)
- MIP tables for the Climate Model Output Rewriter library
- cmtk (3.3.1p1+dfsg-2build1)
- Computational Morphometry Toolkit
- cnvkit (0.9.6-3)
- Copy number variant detection from targeted DNA sequencing
- cod-tools (2.10+dfsg-1)
- tools for manipulating CIF format files
- code-saturne (6.0.2-1)
- General purpose Computational Fluid Dynamics (CFD) software
- code-saturne-bin (6.0.2-1)
- General purpose Computational Fluid Dynamics (CFD) software - binaries
- code-saturne-data (6.0.2-1)
- General purpose Computational Fluid Dynamics (CFD) software - data
- code-saturne-include (6.0.2-1)
- General purpose Computational Fluid Dynamics (CFD) software - includes
- codonw (1.4.4-4)
- Correspondence Analysis of Codon Usage
- coinor-cbc (2.10.3+repack1-1build1)
- Coin-or branch-and-cut mixed integer programming solver
- coinor-clp (1.17.5+repack1-1)
- Coin-or linear programming solver
- coinor-csdp (6.2.0-1)
- A software package for semidefinite programming
- coinor-libcbc3 (2.10.3+repack1-1build1)
- Coin-or branch-and-cut mixed integer programming solver (shared libraries)
- coinor-libcgl1 (0.60.3+repack1-2)
- COIN-OR Cut Generation Library
- coinor-libclp1 (1.17.5+repack1-1)
- Coin-or linear programming solver (shared libraries)
- coinor-libcoinutils3v5 (2.11.4+repack1-1)
- Coin-or collection of utility classes (binaries and libraries)
- coinor-libflopc++0v5 (1.0.6-3.1ubuntu3)
- Formulation of Linear Optimization Problems in C++
- coinor-libosi1v5 (0.108.6+repack1-1)
- COIN-OR Open Solver Interface
- coinor-libsymphony3 (5.6.16+repack1-2build1)
- COIN-OR solver for mixed-integer linear programs (shared libraries)
- coinor-libvol1 (1.5.4-4)
- Coin-or linear programming solver (libraries)
- coinor-symphony (5.6.16+repack1-2build1)
- COIN-OR solver for mixed-integer linear programs
- colmap (3.6+dev2+git20191105-1build1)
- Structure-from-Motion and Multi-View Stereo
- comet-ms (2018012-1build1)
- Tandem mass spectrometry (MS/MS) search engine
- concavity (0.1+dfsg.1-4build1)
- predictor of protein ligand binding sites from structure and conservation
- conda-package-handling (1.6.0-2build1)
- create and extract conda packages of various formats
- connectome-workbench (1.4.2-1build1)
- brain visualization, analysis and discovery tool
- conservation-code (20110309.0-8)
- protein sequence conservation scoring tool
- cp2k (6.1-3ubuntu2)
- Ab Initio Molecular Dynamics
- cp2k-data (6.1-3ubuntu2)
- Ab Initio Molecular Dynamics (data files)
- cpl-plugin-amber (4.3.9+dfsg-2)
- ESO data reduction pipeline for the AMBER instrument
- cpl-plugin-amber-calib (4.3.9+dfsg-2)
- ESO data reduction pipeline calibration data downloader for AMBER
- cpl-plugin-fors (5.4.3+dfsg-1build1)
- ESO data reduction pipeline for the FORS1/2 instruments
- cpl-plugin-fors-calib (5.4.3+dfsg-1build1)
- ESO data reduction pipeline calibration data downloader for FORS2
- cpl-plugin-giraf (2.16.5+dfsg-1)
- ESO data reduction pipeline for the GIRAFFE instrument
- cpl-plugin-giraf-calib (2.16.5+dfsg-1)
- ESO data reduction pipeline calibration data downloader for GIRAFFE
- cpl-plugin-hawki (2.4.6+dfsg-1build1)
- ESO data reduction pipeline for the HAWK-I instrument
- cpl-plugin-hawki-calib (2.4.6+dfsg-1build1)
- ESO data reduction pipeline calibration data downloader for HAWK-I
- cpl-plugin-muse (2.8.1+dfsg-1)
- ESO data reduction pipeline for the MUSE instrument
- cpl-plugin-muse-calib (2.8.1+dfsg-1)
- ESO data reduction pipeline calibration data downloader for MUSE
- cpl-plugin-naco (4.4.8+dfsg-1)
- ESO data reduction pipeline for the NaCo instrument
- cpl-plugin-naco-calib (4.4.8+dfsg-1)
- ESO data reduction pipeline NaCo calibration data downloader
- cpl-plugin-uves (5.10.4+dfsg-1)
- ESO data reduction pipeline for the UVES instrument
- cpl-plugin-uves-calib (5.10.4+dfsg-1)
- ESO data reduction pipeline calibration data downloader for UVES
- cpl-plugin-vimos (3.3.0+dfsg-1build1)
- ESO data reduction pipeline for the VIMOS instrument
- cpl-plugin-vimos-calib (3.3.0+dfsg-1build1)
- ESO data reduction pipeline calibration data downloader for VIMOS
- cpl-plugin-visir (4.3.8+dfsg-1)
- ESO data reduction pipeline for the VISIR instrument
- cpl-plugin-visir-calib (4.3.8+dfsg-1)
- ESO data reduction pipeline calibration data downloader for VISIR
- cpl-plugin-xshoo (3.3.5+dfsg-2)
- ESO data reduction pipeline for the XSHOOTER instrument
- cpl-plugin-xshoo-calib (3.3.5+dfsg-2)
- ESO data reduction pipeline calibration data downloader for XSHOOTER
- cpuinfo (0.0~git20190201.d5e37ad-2)
- CPU INFOrmation library (binary utilities)
- crac (2.5.2+dfsg-2build2)
- integrated RNA-Seq read analysis
- critterding (1.0-beta12.1-1.3build1)
- Evolving Artificial Life
- ctdconverter (2.1-1)
- Convert CTD files into Galaxy tool and CWL CommandLineTool files
- ctsim (6.0.2-3build1)
- Computed tomography simulator
- ctsim-help (6.0.2-3build1)
- Online help file for CTSim
- cutadapt (2.8-2build1)
- Clean biological sequences from high-throughput sequencing reads
- cwltool (2.0.20200224214940+dfsg-1)
- Common Workflow Language reference implementation
- daligner (1.0+git20200115.c2b47da-1)
- local alignment discovery between long nucleotide sequencing reads
- darknet (0.0.0+git20180914.61c9d02e-2build2)
- Open Source Neural Networks in C
- dascrubber (1.1-1)
- alignment-based scrubbing pipeline for DNA sequencing reads
- datalad (0.12.4-2)
- data files management and distribution platform
- datalad-container (1.0.0-2)
- DataLad extension for working with containerized environments
- dawg (1.2-2build1)
- simulate the evolution of recombinant DNA sequences
- dazzdb (1.0+git20200115.d8adde7-2)
- manage nucleotide sequencing read data
- dcm2niix (1.0.20181125-1build1)
- next generation DICOM to NIfTI converter
- dcmtk (3.6.4-2.1build2)
- OFFIS DICOM toolkit command line utilities
- debian-astro-logo (2.1)
- Debian Astronomy Pure Blends Logo
- deepnano (0.0+git20170813.e8a621e-3.1)
- alternative basecaller for MinION reads of genomic sequences
- deepnano-data (0.0+git20170813.e8a621e-3.1)
- alternative basecaller for MinION reads of genomic sequences (data)
- delly (0.8.2-1)
- Structural variant discovery by read analysis
- dh-r (20200104)
- Debian helper tools for packaging R libraries
- dialign (2.2.1-10)
- Segment-based multiple sequence alignment
- dialign-tx (1.0.2-12)
- Segment-based multiple sequence alignment
- dialign-tx-data (1.0.2-12)
- Segment-based multiple sequence alignment (data files)
- diamond-aligner (0.9.30-3)
- accelerated BLAST compatible local sequence aligner
- dicomnifti (2.33.1-1build1)
- converts DICOM files into the NIfTI format
- dimbl (0.15-2.1build1)
- Distributed Memory Based Learner
- dindel (1.01-wu1-3+dfsg-1build1)
- determines indel calls from short-read data
- disulfinder (1.2.11-8build1)
- cysteines disulfide bonding state and connectivity predictor
- disulfinder-data (1.2.11-8build1)
- data files for predictor of disulfide bonds in proteins
- dlmodelbox (1.1.1-1)
- Swiss Army Knife of Deep Learning Models
- dnaclust (3-7build1)
- tool for clustering millions of short DNA sequences
- dotter (4.44.1+dfsg-3build1)
- detailed comparison of two genomic sequences
- dozzaqueux (3.51-2)
- simulator for chemical mixtures
- dozzaqueux-data (3.51-2)
- databases for chemical mixtures
- dpuser (4.0+dfsg-2build1)
- Interactive language for handling numbers, strings, and matrices
- drawxtl (5.5-5build1)
- crystal structure viewer
- drslib (0.3.1.p3-2)
- Command-line tools for the Data Reference Syntax library
- dsdp (5.8-9.4build1)
- Software for Semidefinite Programming
- dssp (3.0.0-3build1)
- protein secondary structure assignment based on 3D structure
- dwgsim (0.1.12-3)
- short sequencing read simulator
- dx (1:4.4.4-12build2)
- OpenDX (IBM Visualization Data Explorer) - main package
- dxf2gcode (20170925-4)
- prepares drawings of parts for automatic machine tools
- dxsamples (4.4.0-4)
- Sample programs for the OpenDX Data Explorer
- e-mem (1.0.1-2build1)
- Efficient computation of Maximal Exact Matches for very large genomes
- e00compr (1.0.1-5)
- Program to read/write Arcinfo compressed E00 files
- ea-utils (1.1.2+dfsg-5build1)
- command-line tools for processing biological sequencing data
- easychem (0.6-8build1)
- Draw high-quality molecules and 2D chemical formulas
- ecaccess (4.0.1-1)
- clients to access ECMWF facilities
- ecflow-client (4.17.1-1build2)
- Client tools for Meteorological workflow
- ecflow-server (4.17.1-1build2)
- Meteorological workflow controller - server
- ecopcr (1.0.1+dfsg-1)
- estimate PCR barcode primers quality
- edfbrowser (1.72+dfsg-1)
- viewer for biosignal storage files such as bdf and edf
- edlib-aligner (1.2.4-2ubuntu1)
- edlib sequence alignment tool using edit distance
- edtsurf (0.2009-6build1)
- triangulated mesh surfaces for protein structures
- elk-lapw (6.3.2-1)
- All-Electron Density-Functional Electronic Structure Code
- elki (0.7.1-10.1)
- Data mining algorithm development framework
- elki-dev (0.7.1-10.1)
- Data mining algorithm development framework - development files
- elph (1.0.1-4build1)
- DNA/protein sequence motif finder
- embassy-domainatrix (0.1.660-3)
- Extra EMBOSS commands to handle domain classification file
- embassy-domalign (0.1.660-3)
- Extra EMBOSS commands for protein domain alignment
- embassy-domsearch (1:0.1.660-3)
- Extra EMBOSS commands to search for protein domains
- emboss (6.6.0+dfsg-7ubuntu2)
- European molecular biology open software suite
- emboss-data (6.6.0+dfsg-7ubuntu2)
- data files for the EMBOSS package
- emboss-explorer (2.2.0-10)
- web-based GUI to EMBOSS
- emmax (0~beta.20100307-1)
- genetic mapping considering population structure
- engauge-digitizer (10.10+ds.1-1build1)
- interactively extracts numbers from bitmap graphs or maps
- ent (1.2debian-2)
- pseudorandom number sequence test program
- epigrass (2.5.0+dfsg-1build1)
- scientific tool for simulations and scenario analysis in network epidemiology
- epsilon-bin (0.9.2+dfsg-4)
- Library for wavelet image compression - tools
- ergo (3.8-1build1)
- Quantum chemistry program for large-scale calculations
- ergo-data (3.8-1build1)
- Quantum chemistry program for large-scale calculations - data package
- eso-midas (19.02pl1.1-1build1)
- European Southern Observatory Munich Image Data Analysis System
- eso-midas-testdata (19.02pl1.1-1build1)
- Test data files for ESO-MIDAS
- eso-pipelines (1.3)
- ESO VLT Instrument pipeline collection
- esorex (3.13.2+dfsg-3build1)
- Execution Tool for European Southern Observatory pipelines
- estscan (3.0.3-3build1)
- ORF-independent detector of coding DNA sequences
- esys-particle (2.3.5+dfsg1-4build2)
- Software for particle-based numerical modelling (MPI version)
- etsf-io (1.0.4-4build2)
- Binary tools to check, merge and read ETSF files
- examl (3.0.21-3)
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
- exonerate (2.4.0-4)
- generic tool for pairwise sequence comparison
- expeyes (4.6.2-1)
- hardware & software framework for developing science experiments
- expeyes-clib (4.6.2-1)
- hardware & software framework for developing science experiments
- eye (19.0928.2249~ds-1)
- semantic web reasoning engine
- eyes17 (4.6.2-1)
- hardware & software framework for developing science experiments
- fast5 (0.6.5-4build1)
- utilities for manipulating Oxford Nanopore Fast5 files
- fastahack (1.0.0+dfsg-5build1)
- utility for indexing and sequence extraction from FASTA files
- fastaq (3.17.0-2)
- FASTA and FASTQ file manipulation tools
- fastdnaml (1.2.2-14)
- Tool for construction of phylogenetic trees of DNA sequences
- fastlink (4.1P-fix100+dfsg-2)
- faster version of pedigree programs of Linkage
- fastlink-doc (4.1P-fix100+dfsg-2)
- Some papers about fastlink
- fastml (3.11-2build1)
- maximum likelihood ancestral amino-acid sequence reconstruction
- fastp (0.20.0+dfsg-1build1)
- Ultra-fast all-in-one FASTQ preprocessor
- fastqc (0.11.9+dfsg-2)
- quality control for high throughput sequence data
- fastqtl (2.184+dfsg-7build2)
- Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
- fasttree (2.1.11-1)
- phylogenetic trees from alignments of nucleotide or protein sequences
- fcc (2.8-1build3)
- Script to compile C/C++ programs and link to Fortran libraries
- feedgnuplot (1.53-1)
- Pipe-oriented frontend to Gnuplot
- ffindex (0.9.9.9-3)
- simple index/database for huge amounts of small files
- figtree (1.4.4-4)
- graphical phylogenetic tree viewer
- fitgcp (0.0.20150429-3)
- fitting genome coverage distributions with mixture models
- fitscut (1.4.4-5)
- Extract cutouts from FITS image format files
- fitsh (0.9.2-1)
- Software package for astronomical image processing
- fitspng (1.4-1build1)
- FITS to PNG converter
- fitsverify (4.20-1build1)
- FITS File Format-Verification Tool
- fityk (1.3.1-5build1)
- general-purpose nonlinear curve fitting and data analysis
- flexbar (1:3.5.0-2build1)
- flexible barcode and adapter removal for sequencing platforms
- (5.0-13build1)
- Trajectory model for tracing air transport phenomena
- fml-asm (0.1-9ubuntu1)
- tool for assembling Illumina short reads in small regions
- foma (1:0.9.18+r243-6)
- Tools for constructing various finite-state automata
- foma-bin (1:0.9.18+r243-6)
- Transitional package for foma
- form (4.2.1+git20200217-1)
- Symbolic manipulation system
- fractalnow (0.8.2-4build1)
- Fast, advanced fractal generator
- free42-nologo (1.4.77-1.2build1)
- Free42 is a re-implementation of the HP-42S calculator
- freebayes (1.3.2-2)
- Bayesian haplotype-based polymorphism discovery and genotyping
- freecad (0.18.4+dfsg2-1ubuntu4)
- Extensible Open Source CAx program
- freecad-common (0.18.4+dfsg2-1ubuntu4)
- Extensible Open Source CAx program - common files
- freecad-python3 (0.18.4+dfsg2-1ubuntu4)
- Extensible Open Source CAx program - Python 3 binaries
- freecad-runtime (0.18.4+dfsg2-1ubuntu4)
- Extensible Open Source CAx program - runtime files
- freecontact (1.0.21-7build1)
- fast protein contact predictor
- frog (0.15-1build2)
- tagger and parser for natural languages (runtime)
- frogdata (0.16-1)
- Data files for Frog
- fsa (1.15.9+dfsg-4build1)
- Fast Statistical Alignment of protein, RNA or DNA sequences
- fsm-lite (1.0-3build1)
- frequency-based string mining (lite)
- ftools-fv (5.5+dfsg-2build2)
- Tool for viewing and editing FITS format files
- ftools-pow (5.5+dfsg-2build2)
- Curve plotting and image display interface tool
- funtools (1.4.7-4)
- Minimal buy-in FITS utility package
- fxt-tools (0.3.9-3)
- Multithreaded tracing library
- g3data (1:1.5.3-2.1build1)
- extract data from scanned graphs
- gabedit (2.5.0-1)
- graphical user interface to Ab Initio packages
- galileo (0.5.1-6)
- Utility to securely synchronize a Fitbit device with the Fitbit web service
- galileo-daemon (0.5.1-6)
- Utility to securely synchronize a Fitbit device - daemon
- gamgi (0.17.3-2)
- General Atomistic Modelling Graphic Interface (GAMGI)
- gamgi-data (0.17.3-2)
- General Atomistic Modelling Graphic Interface (data)
- garli (2.1-3build1)
- phylogenetic analysis of molecular sequence data using maximum-likelihood
- garli-examples (2.1-3build1)
- phylogenetic analysis of molecular sequence data (examples)
- garli-mpi (2.1-3build1)
- phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)
- garlic (1.6-3)
- visualization program for biomolecules
- gasic (0.0.r19-5)
- genome abundance similarity correction
- gatb-core (1.4.1+git20191209.9398f28+dfsg-2)
- Genome Analysis Toolbox with de-Bruijn graph
- gatb-core-testdata (1.4.1+git20191209.9398f28+dfsg-2)
- Genome Analysis Toolbox with de-Bruijn graph (test data)
- gausssum (3.0.2-2)
- parse and display Gaussian, GAMESS, and etc's output
- gazebo9 (9.12.0+dfsg-1build2)
- Open Source Robotics Simulator - Binaries
- gazebo9-common (9.12.0+dfsg-1build2)
- Open Source Robotics Simulator - Shared files
- gazebo9-plugin-base (9.12.0+dfsg-1build2)
- Open Source Robotics Simulator - base plug-ins
- gbrowse (2.56+dfsg-8)
- GMOD Generic Genome Browser
- gbrowse-calign (2.56+dfsg-8)
- CAlign helper
- gbrowse-data (2.56+dfsg-8)
- Sample data to use GBrowse
- gbutils (5.7.1-1)
- utilities for command line econometrics
- gchempaint (0.14.17-3)
- 2D chemical structures editor for the GNOME2 desktop
- gcrystal (0.14.17-3)
- lightweight crystal structures visualizer
- gcu-bin (0.14.17-3)
- GNOME chemistry utils (helper applications)
- gcx (1.3-1.1build1)
- astronomical image processing and photometry gtk+ application
- gdal-bin (3.0.4+dfsg-1build3)
- Geospatial Data Abstraction Library - Utility programs
- gdal-data (3.0.4+dfsg-1build3)
- Geospatial Data Abstraction Library - Data files
- gdis (0.90-5build1)
- molecular and crystal model viewer
- gdis-data (0.90-5build1)
- molecular and crystal model viewer (data files)
- gdl-mpfit (1.85+2017.01.03-4)
- Robust non-linear least squares curve fitting for GDL
- gdpc (2.2.5-10)
- visualiser of molecular dynamic simulations
- gdpc-examples (2.2.5-10)
- example files for the gdpc program
- geant321 (1:3.21.14.dfsg-11build4)
- [Physics] Particle detector description and simulation tool
- geant321-data (1:3.21.14.dfsg-11build4)
- [Physics] Data for GEANT 3.21 detector simulator
- gelemental (2.0.0-1build1)
- Periodic Table viewer
- gemma (0.98.1+dfsg-1)
- Genome-wide Efficient Mixed Model Association
- gemma-doc (0.98.1+dfsg-1)
- Example folder for GEMMA
- genometester (4.0+git20180508.a9c14a6+dfsg-1)
- toolkit for performing set operations on k-mer lists
- genomethreader (1.7.3+dfsg-5)
- software tool to compute gene structure predictions
- genometools (1.6.1+ds-2)
- versatile genome analysis toolkit
- genometools-common (1.6.1+ds-2)
- shared data files for GenomeTools
- geographiclib-tools (1.50.1-1build1)
- C++ library to solve some geodesic problems -- tools
- geotiff-bin (1.5.1-2)
- GeoTIFF (geografic enabled TIFF) library -- tools
- getdata (0.2-3)
- management of external databases
- gff2aplot (2.0-11)
- pair-wise alignment-plots for genomic sequences in PostScript
- gff2ps (0.98l-2)
- produces PostScript graphical output from GFF-files
- gffread (0.11.7-2)
- GFF/GTF format conversions, region filtering, FASTA sequence extraction
- gfsview (20121130+dfsg-6)
- graphical viewer for Gerris simulation files
- gfsview-batch (20121130+dfsg-6)
- batch-version of viewer for Gerris simulation files
- ghkl (5.0.0.2569-1build1)
- diffractometer computation control application
- ghmm (0.9~rc3-2ubuntu2)
- General Hidden-Markov-Model library - tools
- giella-core (0.1.1~r129227+svn121148-2ubuntu1)
- GTCORE files for building Giellatekno language packages
- giella-sme (0.0.20150917~r121176-3)
- Giellatekno single language data for North Saami
- giella-sme-dev (0.0.20150917~r121176-3)
- Giellatekno single language data for North Saami (dev extras)
- ginga (3.0.0-1)
- Astronomical image viewer
- ginkgocadx (3.8.8-3build1)
- Medical Imaging Software and complete DICOM Viewer
- glam2 (1064-8)
- gapped protein motifs from unaligned sequences
- glueviz (0.15.5+dfsg-1)
- Linked data visualization
- gmap (2020-04-08+ds1-1)
- spliced and SNP-tolerant alignment for mRNA and short reads
- gmt (6.0.0+dfsg-1build2)
- Generic Mapping Tools
- gmt-common (6.0.0+dfsg-1build2)
- Generic Mapping Tools - Architecture-independent files
- gmt-dcw (1.1.4-2)
- Digital Chart of the World (DCW) for GMT
- gmt-gshhg (2.3.7-4)
- Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
- gmt-gshhg-full (2.3.7-4)
- Full resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-high (2.3.7-4)
- High resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-low (2.3.7-4)
- Low resolution coastlines for the Generic Mapping Tools
- gnuastro (0.11-1build1)
- GNU Astronomy Utilities programs
- gpaw (20.1.0-2build1)
- DFT and beyond within the projector-augmented wave method
- gpaw-data (0.9.20000-2)
- gpaw datasets/setups
- gperiodic (3.0.3-1)
- periodic table application
- gpx (2.5.2-4)
- Gcode to x3g conversion post processor
- gr-fcdproplus (3.8~20190817-3build3)
- Funcube Dongle Pro Plus controller for GNU Radio
- grabix (0.1.7-2build1)
- wee tool for random access into BGZF files
- grads (3:2.2.1-2build3)
- Grid Analysis and Display System for earth science data
- graphlan (1.1.3-2)
- circular representations of taxonomic and phylogenetic trees
- grass (7.8.2-1build3)
- Geographic Resources Analysis Support System (GRASS GIS)
- grass-core (7.8.2-1build3)
- GRASS GIS core components
- grass-doc (7.8.2-1build3)
- GRASS GIS user documentation
- grass-gui (7.8.2-1build3)
- GRASS GIS graphical user interfaces
- gravit (0.5.1+dfsg-3)
- visually stunning gravity simulator
- gravit-data (0.5.1+dfsg-3)
- data files for Gravit
- grinder (0.5.4-5)
- Versatile omics shotgun and amplicon sequencing read simulator
- gromacs (2020.1-1)
- Molecular dynamics simulator, with building and analysis tools
- gromacs-data (2020.1-1)
- GROMACS molecular dynamics sim, data and documentation
- gromacs-mpich (2020.1-1)
- Molecular dynamics sim, binaries for MPICH parallelization
- gromacs-openmpi (2020.1-1)
- Molecular dynamics sim, binaries for OpenMPI parallelization
- gubbins (2.3.5-1)
- phylogenetic analysis of genome sequences
- gvb (1.4-1.1)
- visual simulator of 1 and 2-dimensional vibrations
- gwama (2.2.2+dfsg-2build1)
- Genome-Wide Association Meta Analysis
- gwyddion (2.55-3)
- Scanning Probe Microscopy visualization and analysis tool
- gwyddion-common (2.55-3)
- architecture-independent files for Gwyddion SPM analysis tool
- gyoto (1.4.4-3)
- General relativistic geodesic integration and ray-tracing
- gyoto-bin (1.4.4-3)
- General relativistic ray-tracing command-line interface
- h5utils (1.13.1-3build1)
- HDF5 files visualization tools
- harminv (1.4.1-2build1)
- extraction of complex frequencies and amplitudes from time series
- harvest-tools (1.3-4build2)
- archiving and postprocessing for reference-compressed genomic multi-alignments
- hdf-compass (0.7~b8-2)
- viewer for HDF5 and related formats
- hdf5-helpers (1.10.4+repack-11ubuntu1)
- Hierarchical Data Format 5 (HDF5) - Helper tools
- hdf5-tools (1.10.4+repack-11ubuntu1)
- Hierarchical Data Format 5 (HDF5) - Runtime tools
- herisvm (0.8.2-1)
- machine learning tools for classification algorithms
- hfst (3.15.1-2build3)
- Helsinki Finite-State Transducer Technology
- hfst-ospell (0.5.0-2build2)
- Spell checker library and tool based on HFST
- hhsuite (3.2.0-2build1)
- sensitive protein sequence searching based on HMM-HMM alignment
- hhsuite-data (3.2.0-2build1)
- sensitive protein sequence searching based on HMM-HMM alignment (data)
- hilive (2.0a-3build2)
- realtime alignment of Illumina reads
- hinge (0.5.0-6)
- long read genome assembler based on hinging
- hisat2 (2.1.0-4)
- graph-based alignment of short nucleotide reads to many genomes
- hmmer (3.3+dfsg2-1)
- profile hidden Markov models for protein sequence analysis
- hmmer2 (2.3.2+dfsg-6)
- profile hidden Markov models for protein sequence analysis
- hmmer2-pvm (2.3.2+dfsg-6)
- HMMER programs with PVM (Parallel Virtual Machine) support
- hodie (1.5.0-1)
- prints the date in Latin
- hpcc (1.5.0-2)
- HPC Challenge benchmark
- htcondor (8.6.8~dfsg.1-2ubuntu1)
- distributed workload management system
- hyphy-common (2.5.1+dfsg-3)
- Hypothesis testing using Phylogenies (common files)
- hyphy-mpi (2.5.1+dfsg-3)
- Hypothesis testing using Phylogenies (MPI version)
- hyphy-pt (2.5.1+dfsg-3)
- Hypothesis testing using Phylogenies (pthreads version)
- idba (1.1.3-5build1)
- iterative De Bruijn Graph short read assemblers
- igdiscover (0.11-3)
- analyzes antibody repertoires to find new V genes
- igor (1.3.0+dfsg-1build1)
- infers V(D)J recombination processes from sequencing data
- imagej (1.52r-1)
- Image processing program with a focus on microscopy images
- imview (1.1.9h-1build1)
- Image viewing and analysis application
- indelible (1.03-4build1)
- powerful and flexible simulator of biological evolution
- indigo-utils (1.2.3-3build1)
- Organic Chemistry Toolkit Utilities
- infernal (1.1.3-4)
- inference of RNA secondary structural alignments
- inhomog (0.1.9.2-1)
- kinematical backreaction and average scale factor evolution
- inkscape-speleo (1.8-4)
- Inkscape plugin to help draw surveys
- inkscape-survex-export (1.0-3)
- Inkscape plugin to digitise printed surveys
- ipig (0.0.r5-3)
- integrating PSMs into genome browser visualisations
- iqtree (1.6.12+dfsg-1build1)
- efficient phylogenetic software by maximum likelihood
- iraf (2.16.1+2018.11.01-3)
- Image Reduction and Analysis Facility
- iraf-dev (2.16.1+2018.11.01-3)
- Image Reduction and Analysis Facility (development files)
- iraf-fitsutil (2018.07.06-4)
- FITS utilities for IRAF
- iraf-mscred (5.05+2018.07.09-1build2)
- CCD mosaic reduction package for IRAF
- iraf-noao (2.16.1+2018.11.01-3)
- IRAF NOAO data reduction package
- iraf-noao-dev (2.16.1+2018.11.01-3)
- IRAF NOAO data reduction package (development files)
- iraf-rvsao (2.8.3-1build2)
- IRAF package to obtain radial velocities from spectra
- iraf-sptable (1.0~pre20180612-1build2)
- IRAF package for Tabular Spectra
- iraf-wcstools (3.9.5-3)
- Handle the WCS of a FITS image (IRAF package)
- ismrmrd-schema (1.4.0-1build1)
- schema for ISMRMRD
- ismrmrd-tools (1.4.0-1build1)
- command-line tools for ISMRMRD
- itksnap (3.6.0-5build1)
- semi-automatic segmentation of structures in 3D images
- iva (1.0.9+ds-10)
- iterative virus sequence assembler
- jaligner (1.0+dfsg-6)
- Smith-Waterman algorithm with Gotoh's improvement
- jblas (1.2.4-2build1)
- fast linear algebra library for Java
- jellyfish (2.3.0-4build1)
- count k-mers in DNA sequences
- jellyfish-examples (2.3.0-4build1)
- count k-mers in DNA sequences (examples for testing)
- jellyfish1 (1.1.11-4build1)
- count k-mers in DNA sequences
- jemboss (6.6.0+dfsg-7ubuntu2)
- graphical user interface to EMBOSS
- jmodeltest (2.1.10+dfsg-8)
- HPC selection of models of nucleotide substitution
- jmol (14.6.4+2016.11.05+dfsg1-4build1)
- Molecular Viewer
- jsamp (1.3.7-1)
- Java Simple Application Messaging Protocol tool for VO
- jube (2.2.2-1)
- JUBE Benchmarking Environment
- julia (1.4.1+dfsg-1)
- high-performance programming language for technical computing
- julia-common (1.4.1+dfsg-1)
- high-performance programming language for technical computing (common files)
- jupyter-notebook (6.0.3-2)
- Jupyter interactive notebook
- kalign (1:2.03+20110620-5)
- Global and progressive multiple sequence alignment
- kallisto (0.46.1+dfsg-2build1)
- near-optimal RNA-Seq quantification
- kallisto-examples (0.46.1+dfsg-2build1)
- near-optimal RNA-Seq quantification (example data)
- kalzium (4:19.12.3-0ubuntu1)
- periodic table and chemistry tools
- kalzium-data (4:19.12.3-0ubuntu1)
- data files for Kalzium
- kaptive (0.7.0-2)
- obtain information about K and O types for Klebsiella genome assemblies
- kaptive-data (0.7.0-2)
- reference data for kaptive for Klebsiella genome assemblies
- kaptive-example (0.7.0-2)
- example data for kaptive for Klebsiella genome assemblies
- khmer-common (2.1.2+dfsg-6build2)
- common files for the khmer project tools
- king-probe (2.16.160404+git20180613.a09b012-1)
- Evaluate and visualize protein interatomic packing
- kissplice (2.4.0-p1-5ubuntu1)
- Detection of various kinds of polymorphisms in RNA-seq data
- kleborate (1.0.0-3)
- tool to screen Klebsiella genome assemblies
- kleborate-examples (1.0.0-3)
- tool to screen Klebsiella genome assemblies (example data)
- klustakwik (2.0.1-1build2)
- automatic sorting of the samples (spikes) into clusters
- kma (1.2.21-1)
- mapping genomic sequences to raw reads directly against redundant databases
- kmc (2.3+dfsg-7build1)
- count kmers in genomic sequences
- kmerresistance (2.2.0-1)
- correlates mapped genes with the predicted species of WGS samples
- konclude (0.6.2+939~dfsg-1build1)
- tableau-based description logic reasoner for the semantic web
- kraken (1.1.1-1build1)
- assigning taxonomic labels to short DNA sequences
- kraken2 (2.0.8~beta-1build1)
- taxonomic classification system using exact k-mer matches
- kst (2.0.8-3build4)
- scientific data plotting tool
- kstars (5:3.4.1-1)
- desktop planetarium, observation planning and telescope control
- kstars-data (5:3.4.1-1)
- data files for KStars desktop planetarium
- (1.1r1-9.1)
- Tycho-2 star catalog for KStars
- kxterm (20061220+dfsg3-4.4build1)
- CERNLIB data analysis suite - KUIP terminal emulator
- lagan (2.0-5build1)
- highly parametrizable pairwise global genome sequence aligner
- lamarc (2.1.10.1+dfsg-4build1)
- Likelihood Analysis with Metropolis Algorithm using Random Coalescence
- lambda-align (1.0.3-6)
- Local Aligner for Massive Biological DatA
- lambda-align2 (2.0.0-2build1)
- Local Aligner for Massive Biological DatA - v2
- lammps (20191120+dfsg1-2build2)
- Molecular Dynamics Simulator
- last-align (1060-1)
- genome-scale comparison of biological sequences
- lefse (1.0.8-3)
- determine features of organisms, clades, taxonomic units, genes
- libadios-bin (1.13.1-20)
- ADIOS Adaptable IO system for simulations - binaries
- libadios-examples (1.13.1-20)
- Examples for the ADIOS Adaptable IO system
- libatlas-ecmwf-utils (0.19.0-8build1)
- Numerical weather prediction and climate modelling library - utilities
- libball1.5-data (1.5.0+git20180813.37fc53c-4build2)
- Biochemical Algorithms Library (data files)
- libbio-db-hts-perl (3.01-3)
- Perl interface to the HTS library
- libbio-tools-phylo-paml-perl (1.7.3-2)
- Bioperl interface to the PAML suite
- libbio-tools-run-alignment-clustalw-perl (1.7.4-1)
- Bioperl interface to Clustal W
- libbio-tools-run-alignment-tcoffee-perl (1.7.4-1)
- Bioperl interface to T-Coffee
- libbiojava-java (1:1.7.1-8)
- Java API to biological data and applications (default version)
- libbiojava-java-demos (1:1.7.1-8)
- Example programs for BioJava
- libbiojava1.7-java (1:1.7.1-8)
- Java API to biological data and applications (version 1.7)
- libcamitk4 (4.1.2-4build1)
- Computer Assisted Medical Intervention Tool Kit - runtime
- libcassie1v5 (1.0.9-2build1)
- library implementating search algorithms
- libcg3-1 (1.3.1-2build3)
- Runtime for CG-3
- libclhep2.1v5 (2.1.4.1+dfsg-1build1)
- CLHEP: A Class Library for High Energy Physics
- libdivsufsort3 (2.0.1-4)
- fast suffix array construction
- libeccodes-data (2.16.0-1)
- GRIB and BUFR enecoding/encoding software library - data
- libeckit-utils (1.4.7-7build1)
- C++ toolkit for ECMWF tools and applications - development files
- libej0 (4.6.2-1)
- hardware & software framework for developing science experiments
- libgenometools0 (1.6.1+ds-2)
- versatile genome analysis library
- libgfsgl0 (20121130+dfsg-6)
- graphical viewer for Gerris simulation files. Shared library
- libghemical-data (3.0.0-4.2build3)
- Molecular Modelling Library (data files)
- libgiac0 (1.5.0.85+dfsg1-3)
- Computer Algebra System C++ library
- libgtkdatabox0-glade (1:0.9.3.1-1)
- Gtk+ library to display large amounts of numerical data (glade API)
- libgtkdatabox0-libglade (1:0.9.3.1-1)
- Gtk+ library to display large amounts of numerical data (glade lib)
- libhdf5-jni (1.10.4+repack-11ubuntu1)
- native library used by libhdf5-java
- libismrmrd1.3 (1.4.0-1build1)
- ISMRM Raw Data format (ISMRMRD)
- liblammps-dev (20191120+dfsg1-2build2)
- Molecular Dynamics Simulator (dev files)
- liblammps0 (20191120+dfsg1-2build2)
- Molecular Dynamics Simulator (shared library)
- libliggghts3 (3.8.0+repack1-5build1)
- Open Source DEM Particle Simulation Software. Shared library
- liblinear-tools (2.3.0+dfsg-3build1)
- Standalone applications for LIBLINEAR
- liblorene-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu6)
- liblorene shared library
- liblorene-export-debian0 (0.0.0~cvs20161116+dfsg-1ubuntu6)
- liblorene_export shared library
- liblorenef77-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu6)
- liblorenef77 shared library
- libmstoolkit-tools (82-6build1)
- libraries for manipulating mass spectrometry data - tools
- libncarg-bin (6.6.2-1build4)
- NCAR command-language library - development tools
- libncarg-data (6.6.2-1build4)
- NCAR command-language library - Data
- libngram-tools (1.3.2-3build1)
- OpenGRM n-gram Language Modeling toolkit
- libocas-tools (0.97+dfsg-6)
- Standalone applications implementing the OCAS solver
- libopenfoam (1906.191111+dfsg1-2build1)
- Open source toolbox for Computational Fluid Dynamics (CFD) - libraries
- libotb (7.0.0+dfsg-2build3)
- ORFEO Toolbox library metapackage
- libotb-apps (7.0.0+dfsg-2build3)
- Plugins for ORFEO Toolbox applications
- libpluto-jpl-eph-dev (0.0~git20180228-1.1build1)
- development files to interact with JPL ephemeres data
- libpluto-lunar-dev (0.0~git20180825.e34c1d1-1build1)
- development files for astronomical Lunar library
- libpwiz-tools (3.0.18342-2)
- ProteoWizard command line tools
- libqgis-customwidgets (3.10.4+dfsg-1ubuntu2)
- QGIS custom widgets for Qt Designer
- libqtpropertybrowser4 (4.1.2-4build1)
- Qt Property Browser Library - runtime
- librasterlite2-1 (1.1.0~beta0+really1.0.0~rc0+devel1-2build1)
- library for huge raster coverages using a SpatiaLite DBMS
- librsl1 (1.43-1.2build1)
- TRMM Radar Software Library
- libsilo-bin (4.10.2.real-7)
- Utilities to manipulate libsilo files
- libsqlite3-mod-virtualpg (2.0.0~rc0-1)
- Loadable dynamic extension to both SQLite and SpatiaLite
- libsquizz (0.99d+dfsg-2)
- Conversion libs used by squizz genetic sequence converter
- libssm-bin (1.4.0-1build1)
- macromolecular superposition library - binaries
- libstxxl1v5 (1.4.1-3build1)
- C++ Standard Template Library for extra large datasets
- libvcflib-tools (1.0.1+dfsg-3)
- C++ library for parsing and manipulating VCF files (tools)
- libxy-bin (1.3-1.1build2)
- xylib - utilities
- libyade (2020.01a-6build2)
- Platform for discrete element modeling. Libraries
- liggghts (3.8.0+repack1-5build1)
- Open Source DEM Particle Simulation Software.
- litl-tools (0.1.9-7)
- Lightweight Trace Library - tools
- logol (1.7.9-2)
- Pattern matching tool using Logol language
- logol-bin (1.7.9-2)
- Pattern matching tool using Logol language
- loki (2.4.7.4-10)
- MCMC linkage analysis on general pedigrees
- loki-doc (2.4.7.4-10)
- MCMC linkage analysis on general pedigrees (PS manual)
- looptools (2.8-1build3)
- Integral Evaluator of One-loop Feynman Diagram
- lorene (0.0.0~cvs20161116+dfsg-1ubuntu6)
- framework for numerical relativity
- lorene-codes-src (0.0.0~cvs20161116+dfsg-1ubuntu6)
- source files of LORENE-based codes
- ltrsift (1.0.2-8)
- postprocessing and classification of LTR retrotransposons
- lttoolbox-dev (3.5.1-2build2)
- Development tools and library for lttoolbox
- lucy (1.20-1)
- DNA sequence quality and vector trimming tool
- lutefisk (1.0.7+dfsg-4build1)
- de novo interpretation of peptide CID spectra
- lxi-tools (1.21-1build1)
- LAN eXtensions for Instrumentation (LXI) software interface
- maffilter (1.3.1+dfsg-1build1)
- process genome alignment in the Multiple Alignment Format
- maffilter-examples (1.3.1+dfsg-1build1)
- process genome alignment in the Multiple Alignment Format (example data)
- mafft (7.453-1)
- Multiple alignment program for amino acid or nucleotide sequences
- mapdamage (2.2.0+dfsg-1)
- tracking and quantifying damage patterns in ancient DNA sequences
- mapsembler2 (2.2.4+dfsg-3build2)
- bioinformatics targeted assembly software
- maq (0.7.1-8build1)
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
- maqview (0.2.5-9build1)
- graphical read alignment viewer for short gene sequences
- mash (2.2.2+dfsg-1build1)
- fast genome and metagenome distance estimation using MinHash
- maude (2.7-2build2)
- high-performance logical framework
- mauve-aligner (2.4.0+4736-2build1)
- multiple genome alignment
- mayavi2 (4.7.1-2build1)
- scientific visualization package for 2-D and 3-D data
- mbt (3.4-1build1)
- memory-based tagger-generator and tagger
- mbtserver (0.12-1build1)
- Server extensions for the MBT tagger
- meep (1.12.0-2build2)
- software package for FDTD simulation
- meep-mpi-default (1.12.0-2build2)
- software package for FDTD simulation, parallel (OpenMPI) version
- meep-openmpi (1.12.0-3build2)
- software package for FDTD simulation, parallel (OpenMPI) version
- melting (5.2.0-1)
- compute the melting temperature of nucleic acid duplex
- metaphlan2 (2.9.22-1)
- Metagenomic Phylogenetic Analysis
- metaphlan2-data (2.6.0+ds-4)
- data package for Metagenomic Phylogenetic Analysis
- metastudent (2.0.1-8)
- predictor of Gene Ontology terms from protein sequence
- metastudent-data (2.0.1-4)
- predictor of Gene Ontology terms from protein sequence - data files
- metastudent-data-2 (1.0.0-4)
- predictor of Gene Ontology terms from protein sequence - data #2
- metview (5.7.5-1)
- Interactive data visualization and analysis environment,
- metview-data (5.7.5-1)
- Data needed for the Metview data analysis environment
- mhap (2.1.3+dfsg-2)
- locality-sensitive hashing to detect long-read overlaps
- mia-doctools (2.4.6-5build3)
- Helper scripts for run-time document creation
- mia-tools (2.4.6-5build3)
- Command line tools for gray scale image processing
- mia-viewit (1.0.5-2build1)
- Viewer program for 3D data sets created by using MIA
- mialmpick (0.2.14-2)
- Tools for landmark picking in 3D volume data sets
- microbegps (1.0.0-5)
- explorative taxonomic profiling tool for metagenomic data
- microbiomeutil (20101212+dfsg1-3)
- Microbiome Analysis Utilities
- microbiomeutil-data (20101212+dfsg1-3)
- Reference 16S sequences and NAST-alignments used by microbiomeutil tools
- microhope (4.6.2-1)
- hardware & software framework to learn microcontrollers
- minc-tools (2.3.00+dfsg-3build2)
- MNI medical image format tools
- minia (1.6906-2)
- short-read biological sequence assembler
- miniasm (0.3+dfsg-1)
- ultrafast de novo assembler for long noisy DNA sequencing reads
- minimac4 (1.0.2-2build1)
- Fast Imputation Based on State Space Reduction HMM
- minimap (0.2-4)
- tool for approximate mapping of long biosequences such as DNA reads
- minimap2 (2.17+dfsg-2)
- versatile pairwise aligner for genomic and spliced nucleotide sequences
- minisat (1:2.2.1-5build2)
- Fast and lightweight SAT solver
- minisat+ (1.0-4build1)
- solver for pseudo-Boolean constraints
- minisat2 (1:2.2.1-5build2)
- Transitional package for minisat
- minisat2
- virtuálny balík poskytovaný balíkom minisat
- mipe (1.1-7)
- Tools to store PCR-derived data
- mira-assembler (4.9.6-4build5)
- Whole Genome Shotgun and EST Sequence Assembler
- mira-rfam-12s-rrna (4.9.6-4build5)
- extract of RFAM 12 rRNA database
- mirtop (0.4.23-1)
- annotate miRNAs with a standard mirna/isomir naming
- missfits (2.8.0-2)
- Basic maintenance and packaging tasks on FITS files
- mitools (2.0.3-2build1)
- view, convert and perform basic maths with medical image datasets
- mldemos (0.5.1+git.1.ee5d11f-4)
- Machine Learning Demos (MLDemos) with Visualization
- mlpack-bin (3.2.2-3)
- intuitive, fast, scalable C++ machine learning library (binaries)
- mlv-smile (1.47-6)
- Find statistically significant patterns in sequences
- mmseqs2 (9-d36de+ds-4)
- ultra fast and sensitive protein search and clustering
- mmseqs2-examples (9-d36de+ds-4)
- optional resources for the mmseqs2 package
- mocassin (2.02.73-2)
- MOnte CArlo SimulationS of Ionised Nebulae
- mocassin-benchmarks (2.02.73-2)
- benchmarks for the photoionisation code MOCASSIN
- mocassin-data (2.02.73-2)
- atomic and optical data for the photoionisation code MOCASSIN
- mocassin-examples (2.02.73-2)
- Examples for the photoionisation code MOCASSIN
- montage (6.0+dfsg-6build3)
- Toolkit for assembling FITS images into mosaics
- montage-gridtools (6.0+dfsg-6build3)
- Create files to run montage on the grid
- montecarlo-base (20061220+dfsg3-3.1build4)
- [Physics] Common files for CERNLIB Monte Carlo libraries
- montecarlo-data (20061220+dfsg3-3.1build4)
- [Physics] data for CERNLIB Monte Carlo libraries
- mopac7-bin (1.15-6ubuntu4)
- Semi-empirical Quantum Chemistry Library (binaries)
- morse-simulator (1.4-6build1)
- Multi-OpenRobot Simulation Engine
- morse-simulator-data (1.4-6build1)
- Multi-OpenRobot Simulation Engine
- mothur (1.42.1-1build1)
- sequence analysis suite for research on microbiota
- mpb (1.9.0-2)
- MIT Photonic-Bands
- mpb-mpi (1.9.0-2)
- MIT Photonic-Bands, parallel (mpich) version
- mpb-scm (1.9.0-2)
- MIT Photonic-Bands initialisation files
- mpgrafic (0.3.18-1build1)
- MPI version of N-body initial conditions grafic package
- mpqc (2.3.1-19)
- Massively Parallel Quantum Chemistry Program
- mpqc-support (2.3.1-19)
- Massively Parallel Quantum Chemistry Program (support tools)
- mpqc3 (0.0~git20170114-4.1)
- Massively Parallel Quantum Chemistry Program
- mpqc3-data (0.0~git20170114-4.1)
- Massively Parallel Quantum Chemistry Program (data files)
- mptp (0.2.4-1)
- single-locus species delimitation
- mrbayes-mpi (3.2.6+dfsg-2ubuntu2)
- Bayesian Inference of Phylogeny - mpi version
- mriconvert (1:2.1.0-4build1)
- medical image file conversion utility
- mricron (0.20140804.1~dfsg.1-3)
- magnetic resonance image conversion, viewing and analysis
- mricron-data (0.20140804.1~dfsg.1-3)
- data files for MRIcron
- mrs (6.0.5+dfsg-7build7)
- Information Retrieval System for Biomedical databanks
- mrtrix3 (3.0~rc3+git135-g2b8e7d0c2-5)
- diffusion-weighted MRI white matter tractography
- mseed2sac (2.3+ds1-1)
- Convert MiniSEED time series data to SAC
- msxpertsuite (5.8.6-2build1)
- mass spectrometry software suite - metapackage
- msxpertsuite-massxpert (5.8.6-2build1)
- mass spectrometry software suite - massXpert
- msxpertsuite-massxpert-data-doc (5.8.6-2build1)
- mass spectrometry software suite - massXpert - data and doc
- msxpertsuite-minexpert (5.8.6-2build1)
- mass spectrometry software suite - mineXpert
- msxpertsuite-minexpert-data-doc (5.8.6-2build1)
- mass spectrometry software suite - mineXpert - data and doc
- mummer (3.23+dfsg-4build1)
- Efficient sequence alignment of full genomes
- munipack (0.5.11-2.1build1)
- Astronomical photometry software package
- munipack-cli (0.5.11-2.1build1)
- Command line interface of Munipack
- munipack-core (0.5.11-2.1build1)
- Core routines of Munipack
- munipack-gui (0.5.11-2.1build1)
- Graphical user interface of Munipack
- murasaki (1.68.6-9build2)
- homology detection tool across multiple large genomes
- murasaki-common (1.68.6-9build2)
- homology detection tool across multiple large genomes (common files)
- murasaki-mpi (1.68.6-9build2)
- homology detection tool across multiple large genomes (MPI-version)
- muscle (1:3.8.1551-2build1)
- Multiple alignment program of protein sequences
- music-bin (1.1.16-1.1build2)
- Multi-Simulation Coordinator for MPI -- Utilities
- mustang (3.2.3-3build1)
- multiple structural alignment of proteins
- mustang-testdata (3.2.3-3build1)
- multiple structural alignment of proteins, test data
- nanook (1.33+dfsg-1)
- pre- and post-alignment analysis of nanopore sequencing data
- nanopolish (0.11.3-1build1)
- consensus caller for nanopore sequencing data
- nast-ier (20101212+dfsg1-3)
- NAST-based DNA alignment tool
- nautic (1.5-4build1)
- computation of observer position in astro-navigation
- ncbi-blast+ (2.9.0-2)
- next generation suite of BLAST sequence search tools
- ncbi-blast+-legacy (2.9.0-2)
- NCBI Blast legacy call script
- ncbi-cn3d (3.0.20170106+dfsg1-8)
- 3-dimensional viewer for biological molecules
- ncbi-entrez-direct (12.0.20190816+ds-1)
- NCBI Entrez utilities on the command line
- ncbi-epcr (2.3.12-1-8build1)
- Tool to test a DNA sequence for the presence of sequence tagged sites
- ncbi-rrna-data (6.1.20170106+dfsg1-8)
- large rRNA BLAST databases distributed with the NCBI toolkit
- ncbi-seg (0.0.20000620-5)
- tool to mask segments of low compositional complexity in amino acid sequences
- ncbi-tools-bin (6.1.20170106+dfsg1-8)
- NCBI libraries for biology applications (text-based utilities)
- ncbi-tools-x11 (6.1.20170106+dfsg1-8)
- NCBI libraries for biology applications (X-based utilities)
- ncl-ncarg (6.6.2-1build4)
- NCAR Command Language and NCAR graphics
- ncl-tools (2.1.21+git20190531.feceb81-2build1)
- tools to deal with NEXUS files
- ncoils (2002-7)
- coiled coil secondary structure prediction
- ncview (2.1.8+ds-3build2)
- X11 visual browser for NetCDF format files
- neat (2.2-1build1)
- Nebular Empirical Analysis Tool
- neobio (0.0.20030929-4)
- computes alignments of amino acid and nucleotide sequences
- netcdf-bin (1:4.7.3-1)
- Programs for reading and writing NetCDF files
- neuron (7.6.3-1build4)
- Simulation environment for computational models of neurons
- neuron-dev (7.6.3-1build4)
- Neuron simulation environment - Development files
- nexus-tools (4.4.3-4)
- NeXus scientific data file format - applications
- nifti2dicom (0.4.11-1.1build1)
- convert 3D medical images to DICOM 2D series
- nifti2dicom-data (0.4.11-1.1build1)
- data files for nifti2dicom
- njplot (2.4-8)
- phylogenetic tree drawing program
- node-sphericalmercator (1.0.1-2)
- Spherical Mercator projection support for NodeJS
- node-srs (0.4.8+dfsg-4ubuntu2)
- spatial reference library for Node.js
- norsnet (1.0.17-6)
- tool to identify unstructured loops in proteins
- norsp (1.0.6-4)
- predictor of non-regular secondary structure
- numdiff (5.9.0-1)
- Compare similar files with numeric fields
- nutsqlite (2.0.6-1)
- Dietary nutrition analysis software
- nwchem (7.0.0-2)
- High-performance computational chemistry software
- nwchem-data (7.0.0-2)
- High-performance computational chemistry software (data files)
- oar-common (2.5.8-2)
- OAR batch scheduler common package
- oar-node (2.5.8-2)
- OAR batch scheduler node package
- oar-restful-api (2.5.8-2)
- OAR web services
- oar-server (2.5.8-2)
- OAR batch scheduler server package
- oar-server-mysql (2.5.8-2)
- OAR batch scheduler MySQL server backend package
- oar-server-pgsql (2.5.8-2)
- OAR batch scheduler PostgreSQL server backend package
- oar-user (2.5.8-2)
- OAR batch scheduler user package
- oar-user-mysql (2.5.8-2)
- OAR batch scheduler MySQL user backend package
- oar-user-pgsql (2.5.8-2)
- OAR batch scheduler PostgreSQL user backend package
- oar-web-status (2.5.8-2)
- OAR batch scheduler visualization tool package
- occt-draw (7.3.3+dfsg1-1build1)
- Open CASCADE Technology command interpreter and graphical test system
- oce-draw (0.18.3-1build1)
- OpenCASCADE Community Edition CAE platform shared library
- octave-bart (0.5.00-1)
- Octave bindings for BART
- octave-gdf (0.1.3-3ubuntu2)
- IO library for the GDF -- Octave interface
- octave-psychtoolbox-3 (3.0.16.20200130.dfsg1-1)
- toolbox for vision research -- Octave bindings
- octomap-tools (1.9.3+dfsg-2)
- Tools for 3D occupancy grid mapping
- octovis (1.9.3+dfsg-2)
- Visualization tool for OctoMap
- odil (0.11.0-1build1)
- C++11 library for the DICOM standard (application)
- odin (2.0.3-2build1)
- develop, simulate and run magnetic resonance sequences
- ogdi-bin (4.1.0+ds-1build1)
- Open Geographic Datastore Interface Library -- utilities
- ompl-demos (1.4.2+ds1-5)
- Open Motion Planning Library (OMPL) demos
- ompl-plannerarena (1.4.2+ds1-5)
- Open Motion Planning Library (OMPL) plannerarena
- openbabel (3.0.0+dfsg-3ubuntu3)
- Chemical toolbox utilities (cli)
- openbabel-gui (3.0.0+dfsg-3ubuntu3)
- Chemical toolbox utilities (graphical user interface)
- opencaster (3.2.2+dfsg-1.1build2)
- MPEG2 transport stream data generator and packet manipulator
- openfoam (1906.191111+dfsg1-2build1)
- Open source toolbox for Computational Fluid Dynamics (CFD) - binaries
- openfoam-examples (1906.191111+dfsg1-2build1)
- Open source toolbox for Computational Fluid Dynamics (CFD) - examples
- openmolcas (19.11-1build1)
- Quantum chemistry software package
- openmolcas-data (19.11-1build1)
- Quantum chemistry software package (data files)
- openms (2.4.0-real-1ubuntu4)
- package for LC/MS data management and analysis
- openms-common (2.4.0-real-1ubuntu4)
- package for LC/MS data management and analysis - shared data
- openmx (3.8.5+dfsg1-1build1)
- package for nano-scale material simulations
- openmx-data (3.8.5+dfsg1-1build1)
- package for nano-scale material simulations (data)
- openrocket (15.03.5)
- Model Rocket Simulator
- openturns-examples (1.14-1ubuntu3)
- examples of OpenTURNS functionalities
- openuniverse (1.0beta3.1+dfsg-6build1)
- 3D Universe Simulator
- openuniverse-common (1.0beta3.1+dfsg-6build1)
- 3D Universe Simulator data files
- optgeo (2.25-1)
- simulator for geometrical optics
- opticalraytracer (9.6-1)
- Virtual lens/mirror design workshop
- optimir (1.0-2)
- Integrating genetic variations in miRNA alignment
- orthanc (1.5.8+dfsg-2ubuntu6)
- Lightweight, RESTful DICOM server for medical imaging
- orthanc-dicomweb (1.0+dfsg-2ubuntu10)
- Plugin to extend Orthanc with support of WADO and DICOMweb
- orthanc-imagej (1.2+dfsg-1)
- ImageJ plugin to import images from Orthanc
- orthanc-mysql (2.0-2ubuntu5)
- Plugins to use MySQL or MariaDB as a database back-end to Orthanc
- orthanc-postgresql (3.2-1ubuntu4)
- Plugins to use PostgreSQL as a database back-end to Orthanc
- orthanc-webviewer (2.5-2ubuntu4)
- Web viewer of medical images for Orthanc
- orthanc-wsi (0.6-2ubuntu5)
- Whole-slide imaging support for Orthanc (digital pathology)
- oscar (1.1.0-testing-3-3build1)
- Open Source CPAP Analysis Reporter (OSCAR)
- ossim-core (2.9.1-2build1)
- OSSIM core utilities
- otb-bin (7.0.0+dfsg-2build3)
- ORFEO Toolbox command line applications
- otb-bin-qt (7.0.0+dfsg-2build3)
- ORFEO Toolbox graphical user interface applications
- otb-testdriver (7.0.0+dfsg-2build3)
- ORFEO Toolbox library - OTBTestDriver
- otf-trace (1.12.5+dfsg-6build1)
- Open Trace Format support library - development files
- packmol (20.010-1build1)
- Initial configurations for Molecular Dynamics Simulations
- paje.app (1.98-1build7)
- generic visualization tool (Gantt chart and more)
- pal2nal (14.1-2)
- converts proteins to genomic DNA alignment
- paml (4.9j+dfsg-1)
- Phylogenetic Analysis by Maximum Likelihood (PAML)
- paraclu (9-2build1)
- Parametric clustering of genomic and transcriptomic features
- parafly (0.0.2013.01.21-4build1)
- parallel command processing using OpenMP
- paraview (5.7.0-4ubuntu9)
- Parallel Visualization Application
- parsinsert (1.04-5)
- Parsimonious Insertion of unclassified sequences into phylogenetic trees
- parsinsert-testdata (1.04-5)
- Test data for parsinsert
- parsnp (1.2.1+dfsg-1build1)
- rapid core genome multi-alignment
- patman (1.2.2+dfsg-6build1)
- rapid alignment of short sequences to large databases
- paw (1:2.14.04.dfsg.2-9.1build4)
- Physics Analysis Workstation - a graphical analysis program
- paw++ (1:2.14.04.dfsg.2-9.1build4)
- Physics Analysis Workstation (Lesstif-enhanced version)
- paw-common (1:2.14.04.dfsg.2-9.1build4)
- Physics Analysis Workstation (common files)
- paw-demos (1:2.14.04.dfsg.2-9.1build4)
- Physics Analysis Workstation examples and tests
- pbbamtools (1.0.6+dfsg-2build1)
- processing Pacific Biosciences binary alignment/map files
- pbdagcon (0.3+git20180411.c14c422+dfsg-1build1)
- sequence consensus using directed acyclic graphs
- pbhoney (15.8.24+dfsg-4)
- genomic structural variation discovery
- pbjelly (15.8.24+dfsg-4)
- genome assembly upgrading tool
- pbsim (1.0.3+git20180330.e014b1d+dfsg-1build1)
- simulator for PacBio sequencing reads
- perlprimer (1.2.4-1)
- Graphical design of primers for PCR
- perlprimer-doc (1.2.4-1)
- Tutorial to perlprimer
- perm (0.4.0-4build1)
- efficient mapping of short reads with periodic spaced seeds
- pftools (3+dfsg-3)
- build and search protein and DNA generalized profiles
- phast (1.5+dfsg-1)
- phylogenetic analysis with space/time models
- phipack (0.0.20160614-3build1)
- PHI test and other tests of recombination
- phybin (0.3-3build3)
- binning/clustering newick trees by topology
- phylip (1:3.697+dfsg-1)
- package of programs for inferring phylogenies
- phylip-doc (1:3.697+dfsg-1)
- package of programs for inferring phylogenies (documentation)
- phylonium (1.2-1build1)
- Fast and Accurate Estimation of Evolutionary Distances
- phyml (3:3.3.20190909-1)
- Phylogenetic estimation using Maximum Likelihood
- physamp (1.1.0-1build1)
- sample sequence alignment corresponding to phylogeny
- phyutility (2.7.3+dfsg-2)
- simple analyses or modifications on both phylogenetic trees and data matrices
- phyx (1.01+ds-1build1)
- UNIX-style phylogenetic analyses on trees and sequences
- picard-tools (2.18.25+dfsg-2)
- Command line tools to manipulate SAM and BAM files
- picosat (965-1)
- SAT solver with proof and core support
- piler (0~20140707-2build1)
- genomic repeat analysis
- pilercr (1.06+dfsg-2build1)
- software for finding CRISPR repeats
- pilon (1.23+dfsg-1)
- automated genome assembly improvement and variant detection tool
- pirs (2.0.2+dfsg-8build1)
- Profile based Illumina pair-end Reads Simulator
- pirs-examples (2.0.2+dfsg-8build1)
- profile basd Illumina pair-end Reads Simulator (example data)
- pirs-profiles (2.0.2+dfsg-8build1)
- profile basd Illumina pair-end Reads Simulator (profile data)
- pkg-r-autopkgtest (20200104)
- Script for the automatic testing of R packages
- pktools (2.6.7.6+ds-2build2)
- GDAL add-on tools to perform useful raster processing
- placnet (1.03-3)
- Plasmid Constellation Network project
- planets (0.1.13-20)
- Gravitation simulation of planetary bodies
- plasmidseeker (1.0+dfsg-1)
- identification of known plasmids from whole-genome sequencing reads
- plast (2.3.2+dfsg-1build1)
- Parallel Local Sequence Alignment Search Tool
- plast-example (2.3.2+dfsg-1build1)
- Parallel Local Sequence Alignment Search Tool (example data)
- plastimatch (1.8.0+dfsg.1-2build1)
- medical image reconstruction and registration
- plink (1.07+dfsg-3build1)
- whole-genome association analysis toolset
- plink1.9 (1.90~b6.16-200217-1)
- whole-genome association analysis toolset
- plink2 (2.00~a3-200217+dfsg-1)
- whole-genome association analysis toolset
- pluto-jpl-eph (0.0~git20180228-1.1build1)
- command line handling of JPL ephemeres data
- pluto-lunar (0.0~git20180825.e34c1d1-1build1)
- routines for predictions of positions in solar system
- pnetcdf-bin (1.12.1-1ubuntu2)
- Programs for reading and writing parallel NetCDF files
- poa (2.0+20060928-7)
- Partial Order Alignment for multiple sequence alignment
- populations (1.2.33+svn0120106+dfsg-3build1)
- population genetic software
- porechop (0.2.4+dfsg-1build2)
- adapter trimmer for Oxford Nanopore reads
- poretools (0.6.0+dfsg-4)
- toolkit for nanopore nucleotide sequencing data
- poretools-data (0.6.0+dfsg-4)
- toolkit for nanopore nucleotide sequencing data -- sample datasets
- pp-popularity-contest (1.0.6-4build1)
- PredictProtein popularity contest
- praat (6.1.09-1build1)
- program for speech analysis and synthesis
- prank (0.0.170427+dfsg-2build1)
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
- predictnls (1.0.20-6)
- prediction and analysis of protein nuclear localization signals
- prime-phylo (1.0.11-8build1)
- bayesian estimation of gene trees taking the species tree into account
- primer3 (2.4.0-2)
- tool to design flanking oligo nucleotides for DNA amplification
- primer3-examples (2.4.0-2)
- tool to design flanking oligo nucleotides for DNA amplification (examples)
- proalign (0.603-4)
- Probabilistic multiple alignment program
- probabel (0.5.0+dfsg-3build1)
- Toolset for Genome-Wide Association Analysis
- probabel-examples (0.5.0+dfsg-3build1)
- Example files for ProbABEL
- probalign (1.4-8build1)
- multiple sequence alignment using partition function posterior probabilities
- probcons (1.12-12build1)
- PROBabilistic CONSistency-based multiple sequence alignment
- (1.12-12build1)
- Extra programs from the probcons package
- proda (1.0-12build1)
- multiple alignment of protein sequences
- prodigal (1:2.6.3-4)
- Microbial (bacterial and archaeal) gene finding program
- profbval (1.0.22-6)
- predictor of flexible/rigid protein residues from sequence
- profisis (1.0.11-5)
- prediction of protein-protein interaction sites from sequence
- profnet-bval (1.0.22-6build1)
- neural network architecture for profbval
- profnet-chop (1.0.22-6build1)
- neural network architecture for profchop
- profnet-con (1.0.22-6build1)
- neural network architecture for profcon
- profnet-isis (1.0.22-6build1)
- neural network architecture for profisis
- profnet-md (1.0.22-6build1)
- neural network architecture for metadisorder
- profnet-norsnet (1.0.22-6build1)
- neural network architecture for norsnet
- profnet-prof (1.0.22-6build1)
- neural network architecture for profacc
- profnet-snapfun (1.0.22-6build1)
- neural network architecture for snapfun
- profphd-net (1.0.22-6build1)
- neural network architecture for profphd
- profphd-utils (1.0.10-5build1)
- profphd helper utilities convert_seq and filter_hssp
- proftmb (1.1.12-8build1)
- per-residue prediction of bacterial transmembrane beta barrels
- progressivemauve (1.2.0+4713+dfsg-4build1)
- multiple genome alignment algorithms
- proj-bin (6.3.1-1)
- Cartographic projection library (tools)
- prokka (1.14.5+dfsg-2)
- rapid annotation of prokaryotic genomes
- prooftree (0.13-1build9)
- proof-tree visualization for Proof General
- proteinortho (6.0.14+dfsg-1)
- Detection of (Co-)orthologs in large-scale protein analysis
- prottest (3.4.2+dfsg-3)
- selection of best-fit models of protein evolution
- pscan-chip (1.1-2build1)
- ChIP-based identifcation of TF binding sites
- pscan-chip-data (1.1-2build1)
- auxiliary data for PScan-ChIP
- pscan-tfbs (1.2.2-3build1)
- search for transcription factor binding sites
- psfex (3.17.1+dfsg-5build2)
- Point Spread Function model extractor
- psi3 (3.4.0-6ubuntu1)
- Quantum Chemical Program Suite
- psi4 (1:1.3.2-3build2)
- Quantum Chemical Program Suite
- psi4-data (1:1.3.2-3build2)
- Quantum Chemical Program Suite (data files)
- psortb (3.0.6+dfsg-2)
- bacterial localization prediction tool
- psychopy (2020.1.3+dfsg-2)
- environment for creating psychology stimuli in Python
- psychtoolbox-3-common (3.0.16.20200130.dfsg1-1)
- toolbox for vision research -- arch/interpreter independent part
- psychtoolbox-3-lib (3.0.16.20200130.dfsg1-1)
- toolbox for vision research -- arch-specific parts
- purify (2.0.0-4build4)
- Collection of routines for radio interferometric imaging
- pyfai (0.19.0+dfsg1-1build1)
- Fast Azimuthal Integration scripts
- pyfr (1.5.0-3)
- flux reconstruction in Python
- pylang (0.0.4-0ubuntu3)
- complete right sentence with random words generated.
- pymca (5.5.4+dfsg-1build1)
- Applications and toolkit for X-ray fluorescence analysis -- scripts
- pymca-data (5.5.4+dfsg-1build1)
- Architecture independent data files for PyMca
- pymoctool (0.5.0-4)
- Python Multi-Order Coverage maps tool for Virtual Observatory
- pymol (2.3.0+dfsg-1build1)
- Molecular Graphics System
- pymol-data (2.3.0+dfsg-1build1)
- data files for PyMOL
- pythia8-data (8.1.86-1.2build1)
- PYTHIA8 data files
- python-drizzle-testdata (1.13.1-2build2)
- Dithered image combination for Python (Test data)
- python-escript-doc (5.5-5)
- Documentation for Escript/Finley
- python-nifti (0.20100607.1-4.1build1)
- Python interface to the NIfTI I/O libraries
- python-pyode (1.2.0-4+cvs20090320.3build2)
- Python bindings for The Open Dynamics Engine
- python3-airr (1.2.1-2)
- Data Representation Standard library for antibody and TCR sequences
- python3-alignlib (0.1.1+dfsg-1ubuntu2)
- edit and Hamming distances for biological sequences
- python3-amp (0.6.1-1build2)
- Atomistic Machine-learning Package (python 3)
- python3-escript (5.5-5)
- Escript/Finley finite elements Python3 system (with OpenMP)
- python3-escript-mpi (5.5-5)
- Escript/Finley finite elements Python3 system (OpenMP + MPI)
- python3-gfapy (1.0.0+dfsg-4build1)
- flexible and extensible software library for handling sequence graphs
- python3-gffutils (0.10.1-2)
- Work with GFF and GTF files in a flexible database framework
- python3-jupyter-sphinx (0.2.3-1)
- Jupyter Sphinx Extension - Python3
- python3-louvain (0.0+20181013git3fc1f575-1ubuntu1)
- community graph analysis implementing Louvain method
- python3-morse-simulator (1.4-6build1)
- Multi-OpenRobot Simulation Engine
- python3-noise (1.2.3-3)
- Perlin noise for image generation
- python3-py2bit (0.3.0-3build1)
- access to 2bit files
- python3-pybel (0.12.1-1)
- Biological Expression Language
- python3-pybigwig (0.3.17-1build2)
- Python 3 module for quick access to bigBed and bigWig files
- python3-pynlpl (1.2.9-1)
- PyNLPl is a library for Natural Language Processing (Python 3 version)
- python3-tinyalign (0.2-3)
- numerical representation of differences between strings
- pyzo (4.4.3-1.2)
- interactive editor for scientific Python
- q2templates (2019.10.0+dfsg-1)
- Design template package for QIIME 2 Plugins
- qcumber (1.0.14+dfsg-1)
- quality control of genomic sequences
- qfits-tools (6.2.0-8ubuntu2)
- FITS manipulation tools
- qfitsview (4.0+dfsg-2build1)
- FITS file viewer based on DPUSER
- qgis (3.10.4+dfsg-1ubuntu2)
- Geographic Information System (GIS)
- qgis-api-doc (3.10.4+dfsg-1ubuntu2)
- QGIS API documentation
- qgis-common (3.10.4+dfsg-1ubuntu2)
- QGIS - architecture-independent data
- qgis-plugin-grass (3.10.4+dfsg-1ubuntu2)
- GRASS plugin for QGIS
- qgis-plugin-grass-common (3.10.4+dfsg-1ubuntu2)
- GRASS plugin for QGIS - architecture-independent data
- qgis-provider-grass (3.10.4+dfsg-1ubuntu2)
- GRASS provider for QGIS
- qgis-providers (3.10.4+dfsg-1ubuntu2)
- collection of data providers to QGIS
- qgis-providers-common (3.10.4+dfsg-1ubuntu2)
- collection of data providers to QGIS - architecture-independent files
- qgis-server (3.10.4+dfsg-1ubuntu2)
- QGIS server providing various OGC services
- qgis3-survex-import (1.2-1)
- QGIS3 plugin to read survex 3d files, for cave surveying
- qmapshack (1.14.0-1build2)
- GPS mapping (GeoTiff and vector) and GPSr management
- qmc (0.94-3.1build1)
- Quine McClusky Simplification Tool
- qnifti2dicom (0.4.11-1.1build1)
- convert 3D medical images to DICOM 2D series (gui)
- qrisk2 (0.1.20150729-4)
- cardiovascular disease risk calculator
- qthid-fcd-controller (4.1-5build1)
- Funcube Dongle controller
- qtltools (1.2+dfsg-2build1)
- Tool set for molecular QTL discovery and analysis
- quantum-espresso (6.4.1-1build2)
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite
- quantum-espresso-data (6.4.1-1build2)
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
- quorum (1.1.1-2build1)
- QUality Optimized Reads of genomic sequences
- qutemol (0.4.1~cvs20081111-13build1)
- interactive visualization of macromolecules
- r-cran-colorspace (1.4-1+dfsg-1)
- GNU R Color Space Manipulation
- r-cran-epibasix (1.5-1)
- GNU R Elementary Epidemiological Functions
- r-cran-genetics (1.3.8.1.2-1)
- GNU R package for population genetics
- r-cran-haplo.stats (1.7.9-4)
- GNU R package for haplotype analysis
- r-cran-maptools (1:0.9-9+dfsg-1)
- GNU R Tools for reading and handling spatial objects
- r-cran-msm (1.6.8-1)
- GNU R Multi-state Markov and hidden Markov models in continuous time
- r-cran-randomforest (4.6-14-2)
- GNU R package implementing the random forest classificator
- r-cran-sdmtools (1.1-221.2-1)
- Species Distribution Modelling Tools
- r-cran-sp (1:1.4-0-1)
- GNU R classes and methods for spatial data
- r-cran-spc (1:0.6.3-1)
- GNU R Statistical Process Control
- r-cran-vcd (1:1.4-5-1)
- GNU R Visualizing Categorical Data
- r-cran-xtable (1:1.8-4-1)
- GNU R coerce data to LaTeX and HTML tables
- racon (1.4.10-1build1)
- consensus module for raw de novo DNA assembly of long uncorrected reads
- radiant (2.7.1+dfsg-1)
- explore hierarchical metagenomic data with zoomable pie charts
- ragout (2.2+ds-1build2)
- Reference-Assisted Genome Ordering UTility
- ragout-examples (2.2+ds-1build2)
- Reference-Assisted Genome Ordering UTility (example data)
- rambo-k (1.21+dfsg-3)
- Read Assignment Method Based On K-mers
- rampler (1.1.1-1build1)
- module for sampling genomic sequences
- rapmap (0.15.0+dfsg-1)
- rapid sensitive and accurate DNA read mapping via quasi-mapping
- rapmap-dev (0.15.0+dfsg-1)
- rapmap - rapid sensitive and accurate DNA read mapping (some headers)
- rapmap-example-data (0.15.0+dfsg-1)
- example data for rapmap - rapid sensitive and accurate DNA read mapping
- rasmol (2.7.6.0-1build1)
- visualization of biological macromolecules
- rasmol-doc (2.7.6.0-1build1)
- documentation for rasmol
- rate4site (3.0.0-6build1)
- detector of conserved amino-acid sites
- rawtran (1.1-1build1)
- RAW photo to FITS converter
- raxml (8.2.12+dfsg-4)
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
- ray (2.3.1-7build1)
- de novo genome assemblies of next-gen sequencing data
- (2.3.1-7build1)
- Scripts and XSL sheets for post-processing for ray
- rdkit-data (201909.1-2ubuntu5)
- Collection of cheminformatics and machine-learning software (data files)
- rdp-classifier (2.10.2-4)
- extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
- readseq (1-13)
- Conversion between sequence formats
- reapr (1.0.18+dfsg-5build1)
- universal tool for genome assembly evaluation
- refmac-dictionary (5.41-1)
- dictionary for macromolecular refinement and model building
- relion-bin (1.4+dfsg-4)
- toolkit for 3D reconstructions in cryo-electron microscopy
- relion-bin+gui (1.4+dfsg-4)
- parallel toolkit for 3D reconstructions in cryo-electron microscopy
- relion-bin+mpi (1.4+dfsg-4)
- parallel toolkit for 3D reconstructions in cryo-electron microscopy
- relion-bin+mpi+gui (1.4+dfsg-4)
- parallel toolkit for 3D reconstructions in cryo-electron microscopy
- repeatmasker-recon (1.08-4)
- finds repeat families from biological sequences
- reprof (1.0.1-7)
- protein secondary structure and accessibility predictor
- resfinder (3.2-1)
- identify acquired antimicrobial resistance genes
- resfinder-db (0.0+git20191001.149209d-1)
- ResFinder database is a curated database of acquired resistance genes
- resfinder-example (3.2-1)
- identify acquired antimicrobial resistance genes (example data)
- rna-star (2.7.3a+dfsg-1build2)
- ultrafast universal RNA-seq aligner
- rnahybrid (2.1.2-5)
- Fast and effective prediction of microRNA/target duplexes
- roary (3.13.0+dfsg-1)
- high speed stand alone pan genome pipeline
- rocs (4:19.12.3-0ubuntu1)
- graph theory IDE
- roguenarok (1.0-3)
- versatile and scalable algorithm for rogue taxon identification
- rsem (1.3.3+dfsg-1)
- RNA-Seq by Expectation-Maximization
- rtax (0.984-6)
- Classification of sequence reads of 16S ribosomal RNA gene
- ruby-getspg (1.14.1-5build2)
- C library for crystal symmetry determination - Ruby bindings
- ruby-rgfa (1.3.1+dfsg-1)
- parse, edit and write GFA format graphs in Ruby
- runcircos-gui (0.0+git20180828.97703b9-1build1)
- GUI tool to run circos
- sac2mseed (1.12+ds1-3)
- Convert SAC waveform data to MiniSEED
- saga (7.3.0+dfsg-3build5)
- System for Automated Geoscientific Analyses
- saga-common (7.3.0+dfsg-3build5)
- SAGA GIS architecture independent files
- saint (2.5.0+dfsg-3)
- Significance Analysis of INTeractome
- salmid (0.1.23-1)
- rapid Kmer based Salmonella identifier from sequence data
- salmon (0.12.0+ds1-1)
- wicked-fast transcript quantification from RNA-seq data
- samblaster (0.1.24-2build1)
- marks duplicates, extracts discordant/split reads
- samtools (1.10-3)
- processing sequence alignments in SAM, BAM and CRAM formats
- samtools-test (1.10-3)
- test files for the samtools package
- saods9 (8.1+repack-1)
- Image display tool for astronomy
- sasview (5.0.1-1build1)
- Small Angle Scattering Analysis suite
- sat4j (2.3.5-0.3)
- Efficient library of SAT solvers in Java
- savi (1.5.1-3)
- satellite constellation visualisation
- sbmltoolbox (4.1.0-4)
- libsbml toolbox for octave and matlab
- scamp (2.0.4+dfsg-1build2)
- Compute astrometric and photometric solutions
- science-distributedcomputing (1.12ubuntu1)
- Debian Science Distributed Computing packages
- science-electrophysiology (1.12ubuntu1)
- Debian Science packages for Electrophysiology
- science-highenergy-physics (1.12ubuntu1)
- Debian Science High Energy Physics packages
- science-highenergy-physics-dev (1.12ubuntu1)
- Debian Science High Energy Physics development packages
- science-machine-learning (1.12ubuntu1)
- Debian Science Machine Learning packages
- science-nanoscale-physics (1.12ubuntu1)
- Debian Science Nanoscale Physics packages
- science-nanoscale-physics-dev (1.12ubuntu1)
- Debian Science Nanoscale Physics development packages
- science-neuroscience-modeling (1.12ubuntu1)
- Debian Science packages for modeling of neural systems
- science-physics-dev (1.12ubuntu1)
- Debian Science Physics-dev packages
- science-psychophysics (1.12ubuntu1)
- Debian Science packages for Psychophysics
- science-simulations (1.12ubuntu1)
- Debian Science Simulation packages
- scoary (1.6.16-2)
- pangenome-wide association studies
- scram (0.16.2-1build2)
- Probabilistic Risk Analysis Tool
- scram-gui (0.16.2-1build2)
- SCRAM GUI front-end
- scrm (1.7.3-1build1)
- simulator of evolution of genetic sequences
- sctk (2.4.10-20151007-1312Z+dfsg2-3)
- speech recognition scoring toolkit
- scythe (0.994+git20141017.20d3cff-2)
- Bayesian adaptor trimmer for sequencing reads
- sdaps (1.9.7-0.2ubuntu2)
- scripts for data acquisition with paper-based surveys
- sdrangelove (0.0.1.20150707-3build2)
- Osmocom Software Defined Radio
- seer (1.1.4-2build2)
- genomic sequence element (kmer) enrichment analysis
- segemehl (0.3.4-2build1)
- short read mapping with gaps
- segyio-bin (1.8.3-1build2)
- SEG-Y read/write library for seismic processing (shell utilities)
- sentencepiece (0.1.84-1build1)
- Unsupervised text tokenizer and detokenizer
- seq-gen (1.3.4-2)
- simulate the evolution of nucleotide or amino acid sequences
- seqmagick (0.8.0-1)
- imagemagick-like frontend to Biopython SeqIO
- seqprep (1.3.2-5)
- stripping adaptors and/or merging paired reads of DNA sequences with overlap
- seqprep-data (1.3.2-5)
- example data set for seqprep - only used for testing
- seqtk (1.3-1)
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
- (2.25.0+ds-2)
- Dummy transitional package for name change
- sga (0.10.15-5build1)
- de novo genome assembler that uses string graphs
- shapeit4 (4.1+dfsg-1build1)
- fast and accurate method for estimation of haplotypes (phasing)
- shelxle (1.0.1062-1)
- graphical user interface for SHELXL
- sibsim4 (0.20-4)
- align expressed RNA sequences on a DNA template
- sickle (1.33+git20150314.f3d6ae3-1)
- windowed adaptive trimming tool for FASTQ files using quality
- sigma-align (1.1.3-6)
- Simple greedy multiple alignment of non-coding DNA sequences
- silx (0.12.0+dfsg-1build1)
- Toolbox for X-Ray data analysis - Executables
- sim4 (0.0.20121010-5)
- tool for aligning cDNA and genomic DNA
- simgrid-java (3.24+dfsg-3)
- Java bindings for the SimGrid Toolkit
- simka (1.5.1-4build1)
- comparative metagenomics method dedicated to NGS datasets
- simkamin (1.5.1-4build1)
- approximate comparative metagenomics method dedicated to NGS datasets
- siril (0.9.12-2build3)
- astronomical image processing tool
- siril-common (0.9.12-2build3)
- architecture-independent files for siril
- skesa (2.3.0-2)
- strategic Kmer extension for scrupulous assemblies
- skewer (0.2.2-1build1)
- post-processing of high-throughput DNA sequence reads
- skycat (3.1.2+starlink1~b+dfsg-5build3)
- Image visualization and access to catalogs and data for astronomy
- slang-xfig (0.2.0~.117-2)
- produce plots and drawings through Xfig's fig2dev in S-Lang
- smalt (0.7.6-9)
- Sequence Mapping and Alignment Tool
- smalt-examples (0.7.6-9)
- Sequence Mapping and Alignment Tool (examples)
- smithwaterman (0.0+git20160702.2610e25-7build1)
- determine similar regions between two strings or genomic sequences
- snakemake (5.10.0-2)
- pythonic workflow management system
- snap (2013-11-29-9)
- location of genes from DNA sequence with hidden markov model
- snap-aligner (1.0~beta.18+dfsg-3build1)
- Scalable Nucleotide Alignment Program
- sniffles (1.0.11+ds-1build1)
- structural variation caller using third-generation sequencing
- snp-sites (2.5.1-1)
- Binary code for the package snp-sites
- snpomatic (1.0-4build1)
- fast, stringent short-read mapping software
- soapaligner (2.20-3)
- aligner of short reads of next generation sequencers
- soapdenovo (1.05-5)
- short-read assembly method to build de novo draft assembly
- soapdenovo2 (241+dfsg-3build1)
- short-read assembly method to build de novo draft assembly
- soapsnp (1.03-3build1)
- resequencing utility that can assemble consensus sequence of genomes
- sortmerna (2.1-4build1)
- tool for filtering, mapping and OTU-picking NGS reads
- (2.25.0+ds-2)
- Source extractor for astronomical images
- spaced (1.2.0-201605+dfsg-1build1)
- alignment-free sequence comparison using spaced words
- spades (3.13.1+dfsg-2build2)
- genome assembler for single-cell and isolates data sets
- spaln (2.4.0+dfsg-2build1)
- splicing-aware transcript-alignment to genomic DNA
- spaln-data (2.4.0+dfsg-2build1)
- splicing-aware transcript-alignment to genomic DNA (data)
- spass (3.7-4)
- automated theorem prover for first-order logic with equality
- spatialite-bin (4.3.0-3build1)
- Geospatial extension for SQLite - tools
- spd (1.3.0-1ubuntu3)
- Synchrotron image corrections and azimuthal integration
- splash (2.9.1-1ubuntu1)
- Visualisation tool for Smoothed Particle Hydrodynamics simulation
- spoa (3.0.1-1build1)
- SIMD partial order alignment tool
- spview (2.0.0~beta2-2)
- Spectrum Viewer
- squizz (0.99d+dfsg-2)
- Converter for genetic sequences and alignments
- srst2 (0.2.0-7)
- Short Read Sequence Typing for Bacterial Pathogens
- ssake (4.0-3)
- genomics application for assembling millions of very short DNA sequences
- ssake-examples (4.0-3)
- example data for SSAKE, a genomic assembler of short reads
- sspace (2.1.1+dfsg-5)
- scaffolding pre-assembled contigs after extension
- ssw-align (1.1-9)
- Smith-Waterman aligner based on libssw
- stacks (2.41+dfsg-1build3)
- pipeline for building loci from short-read DNA sequences
- staden (2.0.0+b11-4build1)
- DNA sequence assembly (Gap4/Gap5), editing and analysis tools
- staden-common (2.0.0+b11-4build1)
- Architecture independent files for Staden
- staden-io-lib-examples (1.14.11-6)
- programs for manipulating DNA sequencing files (usage examples)
- staden-io-lib-utils (1.14.11-6)
- programs for manipulating DNA sequencing files
- stardata-common (0.8build1)
- Common framework to manage astronomy packages
- starplot (0.95.5-8.3build1)
- 3-dimensional perspective star map viewer
- starpu-examples (1.3.3+dfsg-2build1)
- Task scheduler for heterogeneous multicore machines - exs
- stellarium (0.19.3-1build1)
- real-time photo-realistic sky generator
- stellarium-data (0.19.3-1build1)
- Stellarium data files
- stiff (2.4.0-3)
- convert scientific FITS images to the TIFF format
- stilts (3.2-2)
- Starlink Tables Infrastructure Library Tool Set
- stimfit (0.16.0-1build2)
- Program for viewing and analyzing electrophysiological data
- stringtie (2.1.1+ds-2)
- assemble short RNAseq reads to transcripts
- subread (2.0.0+dfsg-1)
- toolkit for processing next-gen sequencing data
- subread-data (2.0.0+dfsg-1)
- data files for subread package
- suitename (0.3.070628-2)
- categorize each suite in an RNA backbone
- sumaclust (1.0.35-2)
- fast and exact clustering of genomic sequences
- sumatra (1.0.31-2)
- fast and exact comparison and clustering of sequences
- sumo (1.4.0+dfsg1-1)
- Simulation of Urban MObility (SUMO)
- surankco (0.0.r5+dfsg-2)
- Supervised Ranking of Contigs in de novo Assemblies
- survex (1.2.42-1build2)
- cave surveying and mapping software
- survex-aven (1.2.42-1build2)
- sophisticated cave survey viewer for Survex
- swarm (3.0.0+dfsg-2build1)
- robust and fast clustering method for amplicon-based studies
- swarp (2.38.0+dfsg-4)
- Resample and co-add together FITS images
- swarp
- virtuálny balík poskytovaný balíkom suckless-tools
- swe-basic-data (1.80.00.0002-1ubuntu2)
- basic data files for the libswe package
- swe-standard-data (00004-1)
- standard data for the Swiss Ephemeris
- sweed (3.2.1+dfsg-1)
- assessment of SNPs for their evolutionary advantage
- syrthes (4.3.0-dfsg1-5)
- Transient thermal simulations in complex solid geometries
- syrthes-tests (4.3.0-dfsg1-5)
- Test cases for SYRTHES
- syrthes-tools (4.3.0-dfsg1-5)
- Transient thermal simulations in complex solid geometries - tools
- t-coffee (12.00.7fb08c2-4build1)
- Multiple Sequence Alignment
- t-coffee-examples (12.00.7fb08c2-4build1)
- annotated examples for the use of T-Coffee
- tabix (1.10.2-3)
- generic indexer for TAB-delimited genome position files
- tandem-mass (1:201702011-1build1)
- mass spectrometry software for protein identification
- tantan (22-1build1)
- low complexity and tandem repeat masker for biosequences
- tcd-utils (20061127-2build1)
- convert Tide Constituent Database (TCD) files
- tcl-fitstcl (2.4-4build1)
- Tcl interface to FITS files
- tcliis (8.1+repack-1)
- Tcl IIS protocol package
- terraintool (1.13-2)
- Generates survex format terrain models from SRTM and ASTER data
- therion (5.4.4ds1-5ubuntu1)
- Cave surveying - 2D and 3D drawing software
- therion-doc (5.4.4ds1-5ubuntu1)
- Documentation for Therion Cave surveying software
- therion-viewer (5.4.4ds1-5ubuntu1)
- Cave surveying - 3D viewer for therion models
- theseus (3.3.0-8)
- superimpose macromolecules using maximum likelihood
- theseus-examples (3.3.0-8)
- superimpose macromolecules using maximum likelihood (examples)
- thesias (3.1.1-1)
- Testing Haplotype Effects In Association Studies
- tigr-glimmer (3.02b-2build1)
- Gene detection in archea and bacteria
- timbl (6.4.13-1build1)
- Tilburg Memory Based Learner
- timblserver (1.12-1build1)
- Server extensions for Timbl
- tksao (8.1+repack-1)
- Tk widgets for astronomical imaging and data visualization
- tm-align (20190822+dfsg-2build1)
- structural alignment of proteins
- tnseq-transit (3.0.2-1build1)
- statistical calculations of essentiality of genes or genomic regions
- topcat (4.7-2)
- Tool for OPerations on Catalogues And Tables
- tophat-recondition (1.4-1)
- post-processor for TopHat unmapped reads
- topp (2.4.0-real-1ubuntu4)
- set of programs implementing The OpenMS Proteomic Pipeline
- toppred (1.10-7)
- transmembrane topology prediction
- toulbar2 (1.0.0+dfsg3-2build1)
- Exact combinatorial optimization for Graphical Models
- toulbar2-doc (1.0.0+dfsg3-2build1)
- Exact combinatorial optimization for Graphical Models - documentation
- trace2dbest (3.0.1-1)
- bulk submission of chromatogram data to dbEST
- trace2dbest-doc (3.0.1-1)
- Documentation and sample files for trace2dbest
- tracetuner (3.0.6~beta+dfsg-2build1)
- interpretation of DNA Sanger sequencing data
- transcalc (0.14-6)
- microwave and RF transmission line calculator
- transdecoder (5.0.1-3)
- find coding regions within RNA transcript sequences
- transrate-tools (1.0.0-2build1)
- helper for transrate
- transtermhp (2.09-4build1)
- find rho-independent transcription terminators in bacterial genomes
- travis (190101-1build1)
- trajectory analyzer and visualizer
- tree-ppuzzle (5.2-11)
- Parallelized reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle (5.2-11)
- Reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle-doc (5.2-11)
- Reconstruction of phylogenetic trees by maximum likelihood (doc)
- treeviewx (0.5.1+git20100823.7e4d0e9-2build1)
- Displays and prints phylogenetic trees
- trim-galore (0.6.5-1)
- automate quality and adapter trimming for DNA sequencing
- trimmomatic (0.39+dfsg-1)
- flexible read trimming tool for Illumina NGS data
- trinityrnaseq (2.6.6+dfsg-6build2)
- RNA-Seq De novo Assembly
- trinityrnaseq-examples (2.6.6+dfsg-6build2)
- RNA-Seq De novo Assembly common example and testing files
- tunnelx (20170928-2)
- Cave Survey drawing software
- tvc (5.0.3+git20151221.80e144e+dfsg-3)
- genetic variant caller for Ion Torrent sequencing platforms
- twms (0.07z-1)
- tiny web map service
- ubertooth (2018.12.R1-4)
- 2.4 GHz wireless development platform for Bluetooth experimentation
- ubertooth-firmware (2018.12.R1-4)
- Firmware for Ubertooth
- ubertooth-firmware-source (2018.12.R1-4)
- Source code for the Ubertooth firmware
- uc-echo (1.12-13)
- error correction algorithm designed for short-reads from NGS
- ucto (0.14-2build2)
- Unicode Tokenizer
- uctodata (0.8-2)
- Data files for Ucto
- uhd-host (3.15.0.0-2build5)
- universal hardware driver for Ettus Research products - host apps
- unicycler (0.4.8+dfsg-2build1)
- hybrid assembly pipeline for bacterial genomes
- unicycler-data (0.4.8+dfsg-2build1)
- hybrid assembly pipeline for bacterial genomes (data package)
- units-filter (3.9-1build1)
- Parser for expressions concerning physical values
- v-sim (3.7.2-8build1)
- Visualize atomic structures
- v-sim-common (3.7.2-8build1)
- Visualize atomic structures (support files)
- v-sim-plugins (3.7.2-8build1)
- Plugins for V_Sim (a 3D visualization package)
- varna (3-93+ds-2)
- Visualization Applet for RNA
- vcftools (0.1.16-1build1)
- Collection of tools to work with VCF files
- velvet (1.2.10+dfsg1-7)
- Nucleic acid sequence assembler for very short reads
- velvet-example (1.2.10+dfsg1-7)
- Example data for the Velvet sequence assembler
- velvet-long (1.2.10+dfsg1-7)
- Nucleic acid sequence assembler for very short reads, long version
- velvet-tests (1.2.10+dfsg1-7)
- Test data for the Velvet sequence assembler
- velvetoptimiser (2.2.6-2)
- automatically optimise Velvet do novo assembly parameters
- veusz (3.0.1-1ubuntu4)
- 2D and 3D scientific plotting application with graphical interface
- vg (1.22.0+ds-1)
- tools for working with genome variation graphs
- vg-docs (1.22.0+ds-1)
- tools for working with genome variation graphs -- docs
- viewmol (2.4.1-26ubuntu1)
- graphical front end for computational chemistry programs
- virulencefinder (2.0.3+git20190809.dde157a-1)
- identify virulence genes in total or partial sequenced isolates of bacteria
- virulencefinder-examples (2.0.3+git20190809.dde157a-1)
- example data for virulencefinder
- visp-images-data (3.3.0-1)
- visual servoing library - dataset reference files
- vistrails (3.0~git+9dc22bd-2)
- Science visualisation workflow toolkit
- vmatch (2.3.1+dfsg-6)
- large scale sequence analysis software
- voro++ (0.4.6+dfsg1-3build1)
- library for the computation of the Voronoi diagram
- voro++-examples (0.4.6+dfsg1-3build1)
- library for the computation of the Voronoi diagram (examples)
- voronota (1.21.2744-1build1)
- Voronoi diagram-based tool to find atom contacts
- votca-csg (1.6~rc1-2build1)
- VOTCA's coarse-graining engine
- votca-csg-scripts (1.6~rc1-2build1)
- VOTCA's coarse-graining scripts
- votca-csg-tutorials (1.6~rc1-2build1)
- VOTCA's coarse-graining tutorials
- votca-tools (1.6~rc1-3build1)
- VOTCA's tools library, helper binaries
- vowpal-wabbit (8.6.1.dfsg1-1build2)
- fast and scalable online machine learning algorithm
- vrrender (19.0.0-5ubuntu4)
- DICOM viewer
- vsearch (2.14.1-3build1)
- tool for processing metagenomic sequences
- wannier90 (3.0.0+ds-4build1)
- Maximally Localized Wannier Functions - executables
- wannier90-data (3.0.0+ds-4build1)
- Maximally Localized Wannier Functions - documentation and examples
- wcslib-tools (7.1+ds-2)
- Command line tools utilizing wcslib
- wcstools (3.9.5-3)
- Handle the WCS of a FITS image
- weightwatcher (1.12+dfsg-1)
- Combine maps and polygon data for astronomical image processing
- weka (3.6.14-1)
- Machine learning algorithms for data mining tasks
- wham-align (0.1.5-2build1)
- Wisconsin's High-Throughput Alignment Method
- wigeon (20101212+dfsg1-3)
- reimplementation of the Pintail 16S DNA anomaly detection utility
- wise (2.4.1-21)
- comparison of biopolymers, like DNA and protein sequences
- wsclean (2.8-1build2)
- Fast generic widefield interferometric imager
- wxastrocapture (1.8.1+git20140821.796e1a1+dfsg-1)
- Windows linuX Astronomy Capture
- xbs (0-10build1)
- 3-d models and movies of molecules
- xcas (1.5.0.85+dfsg1-3)
- Computer Algebra System - console and graphical calculator
- xcrysden (1.6.2-3build1)
- Crystalline and Molecular Structure Visualizer
- xcrysden-data (1.6.2-3build1)
- Crystalline and Molecular Structure Visualizer (Data Files)
- xfoil (6.99.dfsg+1-1build1)
- program for the design and analysis of subsonic airfoils
- xmakemol (5.16-9)
- program for visualizing atomic and molecular systems
- xmakemol-gl (5.16-9)
- program for visualizing atomic and molecular systems (OpenGL)
- xpa-tools (2.1.19-1)
- Tools for seamless communication between Unix programs
- xplot (1.19-9build2)
- simple on-screen x-y column data plotter
- xplot-xplot.org (0.90.7.1-4)
- fast tool to graph and visualize lots of data
- xppaut (6.11b+1.dfsg-1build1)
- Phase Plane Plus Auto: Solves many kinds of equations
- xtide (2.13.2-1build2)
- provides tide and current predictions
- xtide-coastline (20020202-1)
- coastline data for xtide
- xtide-data (20100529-1)
- Harmonics data for xtide
- xyscan (4.30-2build2)
- data thief for scientists
- yade (2020.01a-6build2)
- Platform for discrete element modeling
- yagv (0.4~20171211.r234ef16+dfsg-1)
- yet another G-code viewer
- yaha (0.1.83-1build1)
- find split-read mappings on single-end queries
- yorick-av (0.0.5-1build1)
- write movies from Yorick in various formats
- yorick-full (2.2.04+dfsg1+full)
- full installation of the Yorick interpreter and add-ons
- yorick-gy (0.0.5-1)
- GObject introspection and Gtk bindings for Yorick
- yorick-gyoto (1.4.4-3)
- General relativistic geodesic integration for the Yorick language
- yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-2)
- optical interferometry image reconstruction within Yorick
- yorick-mpeg (0.1-3)
- MPEG output support for the Yorick language
- yorick-mpy-common (2.2.04+dfsg1-10)
- Message Passing Yorick (common files)
- yorick-mpy-mpich2 (2.2.04+dfsg1-10)
- Message Passing Yorick (MPICH2 build)
- yorick-mpy-openmpi (2.2.04+dfsg1-10)
- Message Passing Yorick (OpenMPI build)
- yorick-svipc (0.16-5build1)
- interprocess communication (shared memory...) for Yorick
- yorick-ygsl (1.2.1-1build1)
- GSL special functions plugin for the Yorick language
- yorick-ynfft (1.0.3-1)
- nonequispaced fast Fourier transform for Yorick
- z3 (4.8.7-4build1)
- theorem prover from Microsoft Research
- z88 (13.0.0+dfsg2-6)
- Finite Element Analysis Program - runtime
- zalign (0.9.1-4build1)
- parallel local alignment of biological sequences
- zegrapher (3.0.2-1build1)
- plotting mathematical functions and sequences on the plane
- zimpl (3.3.6-2)
- mathematical modeling language for optimization problems
- ztex-bmp (20120314-2)
- universal macro processor