Balík: transdecoder (5.0.1-3)
Odkazy pre transdecoder
Zdroje Trisquel:
Stiahnuť zdrojový balík transdecoder:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Michael R. Crusoe
- Andreas Tille
Externé zdroje:
- Domovská stránka [transdecoder.github.io]
Podobné balíky:
find coding regions within RNA transcript sequences
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.
TransDecoder identifies likely coding sequences based on the following criteria:
* a minimum length open reading frame (ORF) is found in a transcript sequence * a log-likelihood score similar to what is computed by the GeneID software is > 0. * the above coding score is greatest when the ORF is scored in the 1st reading frame as compared to scores in the other 5 reading frames. * if a candidate ORF is found fully encapsulated by the coordinates of another candidate ORF, the longer one is reported. However, a single transcript can report multiple ORFs (allowing for operons, chimeras, etc). * optional the putative peptide has a match to a Pfam domain above the noise cutoff score.
Ostatné balíky súvisiace s balíkom transdecoder
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- dep: liburi-perl
- module to manipulate and access URI strings
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
Stiahnuť transdecoder
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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all | 180.8 kB | 531 kB | [zoznam súborov] |