Paket: minia (3.2.6-1)
Länkar för minia
Trisquelresurser:
Hämta källkodspaketet minia:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Olivier Sallou
- Andreas Tille
- Steffen Moeller
Externa resurser:
- Hemsida [minia.genouest.org]
Liknande paket:
short-read biological sequence assembler
What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.
This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.
The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.
Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).
Andra paket besläktade med minia
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- dep: bc
- GNU bc arbitrary precision calculator language
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2)
- dynamic library of the Genome Analysis Toolbox
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: zlib1g
- compression library - runtime
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- sug: bandage
- Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Hämta minia
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 391,2 kbyte | 652 kbyte | [filförteckning] |