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[ Källkod: prokka  ]

Paket: prokka (1.14.6+dfsg-4)

Länkar för prokka

prokka

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Hämta källkodspaketet prokka:

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Michael R. Crusoe
  • Andreas Tille

Externa resurser:

  • Hemsida [www.vicbioinformatics.com]

Liknande paket:

rapid annotation of prokaryotic genomes

A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.

Andra paket besläktade med prokka

  • beror
  • rekommenderar
  • föreslår
  • dep: aragorn
    tRNA and tmRNA detection in nucleotide sequences
  • dep: default-jre
    Standard Java or Java compatible Runtime
  • dep: hmmer
    profile hidden Markov models for protein sequence analysis
  • dep: infernal
    inference of RNA secondary structural alignments
  • dep: less
    pager program similar to more
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libbio-searchio-hmmer-perl
    perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
  • dep: libswiss-perl
    Perl API to the UniProt database
  • dep: libxml-simple-perl
    Perl module for reading and writing XML
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: ncbi-tools-bin
    NCBI libraries for biology applications (text-based utilities)
  • dep: parallel
    build and execute command lines from standard input in parallel
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: prodigal
    Microbial (bacterial and archaeal) gene finding program

Hämta prokka

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 9.960,6 kbyte92544 kbyte [filförteckning]